TCONS_00035949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035949
Unique NameTCONS_00035949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035949 ID=TCONS_00035949|Name=TCONS_00035949|organism=Clytia hemisphaerica|type=transcript|length=434bp
ACTATTGACATCCAAAACTGAATCACTTCGTACTCGATTTCGCACAATCC
ATACAGAATTACAGCTAACACTTGGAGATAACAACTACCTTGAAATCTTC
TCAACAAGGTTTAATGAAACTTCAGATTCATTCAGAGAAATCATACAAAA
GATCAAGATTCATATGAGAATCCTGCGACGCGACAGAGAAGTAGAAGATT
GTGAATTACAGAAGATCCAGTTGAATTCCCACAAGTTCCTGATGACTGAA
ATCAAAACTTCCATCCCAACATTACGCACCATCTTCAGCCAAGATCCGAC
CAACTTCAGCTACGATGAATTGGTCAATGCAAAATCAAACTTGAACCACT
ACACAAAGAAGCTGGATCACATGGCCCTCCAAGTCAAAGAAATGTTGGTC
AACTCACACAAAGCAGACCACAGTGAAGTTGATG
Run BLAST on NCBI

protein sequence of TCONS_00035949-protein

>TCONS_00035949-protein ID=TCONS_00035949-protein|Name=TCONS_00035949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
LLTSKTESLRTRFRTIHTELQLTLGDNNYLEIFSTRFNETSDSFREIIQK
IKIHMRILRRDREVEDCELQKIQLNSHKFLMTEIKTSIPTLRTIFSQDPT
NFSYDELVNAKSNLNHYTKKLDHMALQVKEMLVNSHKADHSEVD
Run BLAST on NCBI

transcript from alignment at sc0001391:78253..78686

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035949 ID=TCONS_00035949|Name=TCONS_00035949|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0001391:78253..78686 (Clytia hemisphaerica)
CATCAACTTCACTGTGGTCTGCTTTGTGTGAGTTGACCAACATTTCTTTG
ACTTGGAGGGCCATGTGATCCAGCTTCTTTGTGTAGTGGTTCAAGTTTGA
TTTTGCATTGACCAATTCATCGTAGCTGAAGTTGGTCGGATCTTGGCTGA
AGATGGTGCGTAATGTTGGGATGGAAGTTTTGATTTCAGTCATCAGGAAC
TTGTGGGAATTCAACTGGATCTTCTGTAATTCACAATCTTCTACTTCTCT
GTCGCGTCGCAGGATTCTCATATGAATCTTGATCTTTTGTATGATTTCTC
TGAATGAATCTGAAGTTTCATTAAACCTTGTTGAGAAGATTTCAAGGTAG
TTGTTATCTCCAAGTGTTAGCTGTAATTCTGTATGGATTGTGCGAAATCG
AGTACGAAGTGATTCAGTTTTGGATGTCAATAGT

Coding sequence (CDS) from alignment at sc0001391:78253..78686

>TCONS_00035949 ID=TCONS_00035949|Name=TCONS_00035949|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0001391:78253..78686 (Clytia hemisphaerica)
ATCAACTTCACTGTGGTCTGCTTTGTGTGAGTTGACCAACATTTCTTTGA
CTTGGAGGGCCATGTGATCCAGCTTCTTTGTGTAGTGGTTCAAGTTTGAT
TTTGCATTGACCAATTCATCGTAGCTGAAGTTGGTCGGATCTTGGCTGAA
GATGGTGCGTAATGTTGGGATGGAAGTTTTGATTTCAGTCATCAGGAACT
TGTGGGAATTCAACTGGATCTTCTGTAATTCACAATCTTCTACTTCTCTG
TCGCGTCGCAGGATTCTCATATGAATCTTGATCTTTTGTATGATTTCTCT
GAATGAATCTGAAGTTTCATTAAACCTTGTTGAGAAGATTTCAAGGTAGT
TGTTATCTCCAAGTGTTAGCTGTAATTCTGTATGGATTGTGCGAAATCGA
GTACGAAGTGATTCAGTTTTGGATGTCAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021114XLOC_021114Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035949-proteinTCONS_00035949-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035949-exon-sc0001391-1491911889:78253..78686TCONS_00035949-exon-sc0001391-1491911889:78253..78686Clytia hemisphaericaexon
TCONS_00035949-exon-sc0001391-1510915933:78253..78686TCONS_00035949-exon-sc0001391-1510915933:78253..78686Clytia hemisphaericaexon
TCONS_00035949-exon-sc0001391-1575043694:78253..78686TCONS_00035949-exon-sc0001391-1575043694:78253..78686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001391supercontigsc0001391:78253..78686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22914	1.06389	1.7944	1.56029	0.584009	0.680385	0	0.709089	0	0	0	0.311079	0	0.211691	0.179071	0.322612	0	0	0.275446	0.480771	0	0.66925	0.946646	0.400938	0	0	0.405386	0.924238	0.217272	0.35716
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top