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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035948 ID=TCONS_00035948|Name=TCONS_00035948|organism=Clytia hemisphaerica|type=transcript|length=929bp
NAAAGACATCTATGCGTTACTCGATGACAAACGGCAAACAAAATGGTTTG
AATCTATTGATGGAAGACATCTTGACGATGCTGACATCTGGAAAGAATTC
ATCACCTTCCTCGAGAAAGAGTTATCAATTCAACAAATGAAGTTGCTTCA
CTGCACCAATGATTCTAAACCAGTCCCTCCTCGAAATCCTTCCTCATCAC
ACCACTCTGGTAGACAAGATGATCAAACTCAAAGTCATGGCAACAACAAA
GATGCATCTTTCATTTGTGGTGAAGAAGGACATAACAAGACACATGGCCC
TAAAGGTTCAAAGATCATTCAGTACTACTCATGTCGAGTATTCGTGGAGA
TGACACCATCACAACGATTAAATGCCCTAAAGAAGAAAGGATATTGCTGG
CAATGCTTGTATCCTGGTGCACTTCGATCAAATGAGAAACACAAAGAAGG
TCGATGTCAAAATCACTTCATCTGCAAACATCAATCACATGATAACTTCC
CTACAAAGAAGCATGTCCTCGTATGTCAAGATCATGCATCCAACAGTCAG
AATGAAGATACTCTTCAAACGTACAAGGACAGATACATCAATCGACAATC
AAATGTATCACCCTTCTCGAAGGACATAAAGCTGGTCTTCTTCACCACAT
TCAACTCGCTNAATACCCTTCAAACGTACAAGGACAGATACATCAATCGA
CAATCAAATGTATCACCCTTCTCAAAGGACATAAAGCTGGTCTTCTTCAC
CACATTCAACTCGCTGAAGAACCTTAATCCTGATCCAGAAGTTGACAACA
ATGCCATTTACATTTTGCAGACAATTGAAGTTGACGGTCAAAGGTATACA
ATATTCTTCGATCTAGGATGTAGCGATATGGTCATCACTGAAAAAGCTGT
CAAGAAACTGGGCAAACGTGCCTCATTAN Run BLAST on NCBI protein sequence of TCONS_00035948-protein >TCONS_00035948-protein ID=TCONS_00035948-protein|Name=TCONS_00035948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
KDIYALLDDKRQTKWFESIDGRHLDDADIWKEFITFLEKELSIQQMKLLH
CTNDSKPVPPRNPSSSHHSGRQDDQTQSHGNNKDASFICGEEGHNKTHGP
KGSKIIQYYSCRVFVEMTPSQRLNALKKKGYCWQCLYPGALRSNEKHKEG
RCQNHFICKHQSHDNFPTKKHVLVCQDHASNSQNEDTLQTYKDRYINRQS
NVSPFSKDIKLVFFTTFNSXNTLQTYKDRYINRQSNVSPFSKDIKLVFFT
TFNSLKNLNPDPEVDNNAIYILQTIEVDGQRYTIFFDLGCSDMVITEKAV
KKLGKRASL Run BLAST on NCBI transcript from alignment at sc0001391:76317..77245 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035948 ID=TCONS_00035948|Name=TCONS_00035948|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at sc0001391:76317..77245 (Clytia hemisphaerica)
NTAATGAGGCACGTTTGCCCAGTTTCTTGACAGCTTTTTCAGTGATGACC
ATATCGCTACATCCTAGATCGAAGAATATTGTATACCTTTGACCGTCAAC
TTCAATTGTCTGCAAAATGTAAATGGCATTGTTGTCAACTTCTGGATCAG
GATTAAGGTTCTTCAGCGAGTTGAATGTGGTGAAGAAGACCAGCTTTATG
TCCTTTGAGAAGGGTGATACATTTGATTGTCGATTGATGTATCTGTCCTT
GTACGTTTGAAGGGTATTNAGCGAGTTGAATGTGGTGAAGAAGACCAGCT
TTATGTCCTTCGAGAAGGGTGATACATTTGATTGTCGATTGATGTATCTG
TCCTTGTACGTTTGAAGAGTATCTTCATTCTGACTGTTGGATGCATGATC
TTGACATACGAGGACATGCTTCTTTGTAGGGAAGTTATCATGTGATTGAT
GTTTGCAGATGAAGTGATTTTGACATCGACCTTCTTTGTGTTTCTCATTT
GATCGAAGTGCACCAGGATACAAGCATTGCCAGCAATATCCTTTCTTCTT
TAGGGCATTTAATCGTTGTGATGGTGTCATCTCCACGAATACTCGACATG
AGTAGTACTGAATGATCTTTGAACCTTTAGGGCCATGTGTCTTGTTATGT
CCTTCTTCACCACAAATGAAAGATGCATCTTTGTTGTTGCCATGACTTTG
AGTTTGATCATCTTGTCTACCAGAGTGGTGTGATGAGGAAGGATTTCGAG
GAGGGACTGGTTTAGAATCATTGGTGCAGTGAAGCAACTTCATTTGTTGA
ATTGATAACTCTTTCTCGAGGAAGGTGATGAATTCTTTCCAGATGTCAGC
ATCGTCAAGATGTCTTCCATCAATAGATTCAAACCATTTTGTTTGCCGTT
TGTCATCGAGTAACGCATAGATGTCTTTN Coding sequence (CDS) from alignment at sc0001391:76317..77245 >TCONS_00035948 ID=TCONS_00035948|Name=TCONS_00035948|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0001391:76317..77245 (Clytia hemisphaerica)
TAATGAGGCACGTTTGCCCAGTTTCTTGACAGCTTTTTCAGTGATGACCA
TATCGCTACATCCTAGATCGAAGAATATTGTATACCTTTGACCGTCAACT
TCAATTGTCTGCAAAATGTAAATGGCATTGTTGTCAACTTCTGGATCAGG
ATTAAGGTTCTTCAGCGAGTTGAATGTGGTGAAGAAGACCAGCTTTATGT
CCTTTGAGAAGGGTGATACATTTGATTGTCGATTGATGTATCTGTCCTTG
TACGTTTGAAGGGTATTNAGCGAGTTGAATGTGGTGAAGAAGACCAGCTT
TATGTCCTTCGAGAAGGGTGATACATTTGATTGTCGATTGATGTATCTGT
CCTTGTACGTTTGAAGAGTATCTTCATTCTGACTGTTGGATGCATGATCT
TGACATACGAGGACATGCTTCTTTGTAGGGAAGTTATCATGTGATTGATG
TTTGCAGATGAAGTGATTTTGACATCGACCTTCTTTGTGTTTCTCATTTG
ATCGAAGTGCACCAGGATACAAGCATTGCCAGCAATATCCTTTCTTCTTT
AGGGCATTTAATCGTTGTGATGGTGTCATCTCCACGAATACTCGACATGA
GTAGTACTGAATGATCTTTGAACCTTTAGGGCCATGTGTCTTGTTATGTC
CTTCTTCACCACAAATGAAAGATGCATCTTTGTTGTTGCCATGACTTTGA
GTTTGATCATCTTGTCTACCAGAGTGGTGTGATGAGGAAGGATTTCGAGG
AGGGACTGGTTTAGAATCATTGGTGCAGTGAAGCAACTTCATTTGTTGAA
TTGATAACTCTTTCTCGAGGAAGGTGATGAATTCTTTCCAGATGTCAGCA
TCGTCAAGATGTCTTCCATCAATAGATTCAAACCATTTTGTTTGCCGTTT
GTCATCGAGTAACGCATAGATGTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035948-exon-sc0001391-1491911889:76317..77245 | TCONS_00035948-exon-sc0001391-1491911889:76317..77245 | Clytia hemisphaerica | exon |
| TCONS_00035948-exon-sc0001391-1510915933:76317..77245 | TCONS_00035948-exon-sc0001391-1510915933:76317..77245 | Clytia hemisphaerica | exon |
| TCONS_00035948-exon-sc0001391-1575043694:76317..77245 | TCONS_00035948-exon-sc0001391-1575043694:76317..77245 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001391 | supercontig | sc0001391:76317..77245 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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