TCONS_00035942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035942
Unique NameTCONS_00035942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035942 ID=TCONS_00035942|Name=TCONS_00035942|organism=Clytia hemisphaerica|type=transcript|length=279bp
AACAGAAATAGTGATGCACAGTTTACAGAGCTTTTTTCAGATAACCTTTT
CATGATATTATCAGAAGGAGAGAAAAGATTGTTTGAAACAAGATTTGATG
TTCGAGGAACTTGCCCTGTTTGTGATAACGAGAGACAAAGTAAGACAGGT
ATCATTGTTGCTCTTCTTACAGACTTTTTATATCCAGAGATTACTATGGA
CCCAAACAACTGGCCAGATTGTGTGAATAGAGCTCTTGATCCAAGTACAG
AAGTTTATTGTAATATTTGTTCTGTCAAT
Run BLAST on NCBI

transcript from alignment at sc0001391:50575..50853

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035942 ID=TCONS_00035942|Name=TCONS_00035942|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at sc0001391:50575..50853 (Clytia hemisphaerica)
ATTGACAGAACAAATATTACAATAAACTTCTGTACTTGGATCAAGAGCTC
TATTCACACAATCTGGCCAGTTGTTTGGGTCCATAGTAATCTCTGGATAT
AAAAAGTCTGTAAGAAGAGCAACAATGATACCTGTCTTACTTTGTCTCTC
GTTATCACAAACAGGGCAAGTTCCTCGAACATCAAATCTTGTTTCAAACA
ATCTTTTCTCTCCTTCTGATAATATCATGAAAAGGTTATCTGAAAAAAGC
TCTGTAAACTGTGCATCACTATTTCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021107XLOC_021107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035942-exon-sc0001391-1491911889:50575..50853TCONS_00035942-exon-sc0001391-1491911889:50575..50853Clytia hemisphaericaexon
TCONS_00035942-exon-sc0001391-1510915933:50575..50853TCONS_00035942-exon-sc0001391-1510915933:50575..50853Clytia hemisphaericaexon
TCONS_00035942-exon-sc0001391-1575043694:50575..50853TCONS_00035942-exon-sc0001391-1575043694:50575..50853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001391supercontigsc0001391:50575..50853 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54489	2.13739	0.10409	0	0.267197	0	0	1.09821	0.844221	0.522852	0	2.63569	0.812575	1.7375	0	0.108783	0	0	0	0.557205	2.26139	0.250656	0	0	0.504277	0	0	0	0	0.754387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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