TCONS_00035939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035939
Unique NameTCONS_00035939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035939 ID=TCONS_00035939|Name=TCONS_00035939|organism=Clytia hemisphaerica|type=transcript|length=222bp
AAAGCTTACGGAACACTTAAAAGTCTCGCGCTGATTAAACGTTATCTACC
GTACCGACTTCGTTGCCAGCTTGCCGAAACCCTCGTCCTAAGTAAACTGG
ACTATGGTAATAGTGTCTTCAACAATGCACCAGACTACCTTTTCAAACAa
ctacaaaaaatacaaaatgccGCTGCCAGCTTTGTAAGAAAGAGTTATTC
GCGGGAAACTGATGTCATCGCT
Run BLAST on NCBI

transcript from alignment at sc0001391:1166..1387

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035939 ID=TCONS_00035939|Name=TCONS_00035939|organism=Clytia hemisphaerica|type=transcript|length=222bp|location=Sequence derived from alignment at sc0001391:1166..1387 (Clytia hemisphaerica)
AGCGATGACATCAGTTTCCCGCGAATAACTCTTTCTTACAAAGCTGGCAG
CggcattttgtattttttgtagtTGTTTGAAAAGGTAGTCTGGTGCATTG
TTGAAGACACTATTACCATAGTCCAGTTTACTTAGGACGAGGGTTTCGGC
AAGCTGGCAACGAAGTCGGTACGGTAGATAACGTTTAATCAGCGCGAGAC
TTTTAAGTGTTCCGTAAGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021104XLOC_021104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035939-exon-sc0001391-1491911889:1166..1387TCONS_00035939-exon-sc0001391-1491911889:1166..1387Clytia hemisphaericaexon
TCONS_00035939-exon-sc0001391-1510915933:1166..1387TCONS_00035939-exon-sc0001391-1510915933:1166..1387Clytia hemisphaericaexon
TCONS_00035939-exon-sc0001391-1575043694:1166..1387TCONS_00035939-exon-sc0001391-1575043694:1166..1387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001391supercontigsc0001391:1166..1387 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19907	1.16928	2.1206	0	0	0.965985	0	0.98566	1.01043	0	0	0	0.818924	0.40975	0	0	0	0	1.15689	0.0677933	0	0.990444	0	0.616869	1.96457	5.85672	0	0	0	1.70231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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