TCONS_00035937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035937
Unique NameTCONS_00035937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1004

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035937 ID=TCONS_00035937|Name=TCONS_00035937|organism=Clytia hemisphaerica|type=transcript|length=1004bp
TGTCATGAATGAATGTTGGAATGTTTTGTCTTCACTTTAATCGCTGTATT
TGTTTGAGTTGAGTTTGAGTCAGAGTTGTGTTAGAGCTATTTTGGTCCTT
TCAAATTGGTACCAattatatttgtttgttttgacttttgataaaaatgc
tttttttccattgcagttttgcctatagacgggtttcaatgttttgattt
ttgtgcgGGCGGTCCAATGCGGGCGGGCCAATGCGATCGTTTTTTGGAGG
CAAAAAGACTTACGATTTAAATGGAGGCAAGTGGATATCAATCAATATTT
CGAAAAGTACCAGTCAAATCTCTTTGAAATTTATGAATAATTCTAAACCG
TTTTGTGGTAAAGATGAGAGTTTTGAGATGCCATGTGAAGTAAAGAATAG
TGAAAGAGCTGGTACAGATGATGAAAgcaaaaaagaacaaacaaaaagaa
aagctAGCAGTGCACCGACTGGTTCACCAAAGAaagccaaattgttttgc
tcgggAACAGCATACCAACCCAAAGCTCCTGCAAATGCGATAGATTTTGC
TGGCTTCATTGCATGTGTGTCACCCGTACGGTTATCCTATCAATCGAAGA
AGGAGCACTTTAAtgtgttcatcaaaaccaaACCAACTTCATTTGCAAAA
ATCACAGTGTCAAGcacaaacaaacaattttccGCAATACGTCAAAACTT
TCTCGATTATTTTCACAACAAGGAGCCCGTCACAATCAAGTCATGCTTGC
CCTTGAATGgtagaaactttttcaatgcaTATTCCTTTGTACAACCTTGT
GAAAGGCAGTTAACTTTTAACTTAAATGATGCGGATGCTACACCATTAAA
CGAGATCGAATCAAATTCAATCACTGAGTCCATAGTTGGTAAACTCAGGT
TCCGTGGCCCTGTTCAAGTGAAGCCCTATACCACTAGGGGTGGCAAGGCA
AGAACGGACAAGATGCGGGAATGTGTTATCTCCGATGGATCCACCTGCCT
TTNN
Run BLAST on NCBI

protein sequence of TCONS_00035937-protein

>TCONS_00035937-protein ID=TCONS_00035937-protein|Name=TCONS_00035937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MRSFFGGKKTYDLNGGKWISINISKSTSQISLKFMNNSKPFCGKDESFEM
PCEVKNSERAGTDDESKKEQTKRKASSAPTGSPKKAKLFCSGTAYQPKAP
ANAIDFAGFIACVSPVRLSYQSKKEHFNVFIKTKPTSFAKITVSSTNKQF
SAIRQNFLDYFHNKEPVTIKSCLPLNGRNFFNAYSFVQPCERQLTFNLND
ADATPLNEIESNSITESIVGKLRFRGPVQVKPYTTRGGKARTDKMRECVI
SDGSTCLX
Run BLAST on NCBI

transcript from alignment at sc0001391:64903..66980+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035937 ID=TCONS_00035937|Name=TCONS_00035937|organism=Clytia hemisphaerica|type=transcript|length=2078bp|location=Sequence derived from alignment at sc0001391:64903..66980+ (Clytia hemisphaerica)
TGTCATGAATGAATGTTGGAATGTTTTGTCTTCACTTTAATCGCTGTATT
TGTTTGAGTTGAGTTTGAGTCAGAGTTGTGTTAGAGCTATTTTGGTCCTT
TCAAATTGGTACCAattatatttgtttgttttgacttttgataaaaatgc
tttttttccattgcagttttgcctatagacgggtttcaatgttttgattt
ttgtgcgGGCGGTCCAATGCGGGCGGGCCAATGCGATCGTTTTTTGGAGG
CAAAAAGACTTACGATTTAAATGGAGGCAAGTGGATATCAATCAATATTT
CGAAAAGTACCAGTCAAATCTCTTTGAAATTTATGAATAGTAAGCCTATA
TACCTCTCATAAAACATACTGAAATTTCTATTCAAAAGTCCTACCAGAAA
CTTCGTTACAACAAAAAATCTGCTTGCCTCCagctaatgttatggtcttt
ttgCCTCCAAAAAATCGGACggaaagtcacgtgactaaacaAATGACGTT
TCACGAAACCCGTCTATAGCGTCACTATTTTAATCgtaaagttttcccgg
gcctaatcctcTTCATCCCGTCTCGTAATCTTAAAaataatatactgttc
ttttgaAAGGACTAATAATGGCTGTGCCCTAAAAGATGTCATGGGATCCC
AGGCTTAGCCCCCTACTATATGCAAACAAATGTGGATTATAGAAAGGCTG
AAttgcttttttcgaaattttttctttgcccAAATTCATTTTACACTATT
TtgagtctaaaaagtttgaaatttgtgTGGTTAGGGGGATATAGTATGTA
TgcgcatttttttcaaatgacgTTTTTTAAACAATACATAGACAAAAATG
CCTCTGGAGTTGAATTTTTGAATGCCCCTgtggaatttatttatttcagt
ttatttttgaGTTGGGGGCTAAAGAATATGGGAAATAAAAATGCAATGct
aatttaaacatttttagatGACAGTAAATATCATGCACTTATTTTACCTT
AGATTCTAAACCGTTTTGTGGTAAAGATGAGAGTTTTGAGATGCCATGTG
AAGTAAAGAATAGTGAAAGAGCTGGTACAGATGATGAAAgcaaaaaagaa
caaacaaaaagaaaagctAGCAGTGCACCGACTGGTTCACCAAAGAaagc
caaattgttttgctcgggAACAGCATACCAACCCAAAGCTCCTGCAAATG
CGATAGGTATTGTTTTTGGTTAAGAATTATactaatttttaaatttctgg
cTGTCAAAATGTTAActagaaaatttgaacaaatattttgaCGCCCTCAC
CAAATTTCTGAAAGAACCTAATCTAGACTTATGGTATCATTAAGTTGGTA
CTAATTTTTATagaactaatttttgtggtAACTAAATATTGTGATTTTGG
GTGTCTACCGCGCAGTTTTTAATTGAAATCTAtaaaaacccctaggaaaa
tgaaagaatttcagAATTTCAGCAAAAAGTGTATGTCAACAGCAAAATTT
GttctgccaaattaagttttgacccctctagaaactgaGCAATCTGGTTT
GGTGAATGTAgaaatttctgtttttttgtttaaacaaattgaccaatttc
ttttttccttatTCAAGATTTTGCTGGCTTCATTGCATGTGTGTCACCCG
TACGGTTATCCTATCAATCGAAGAAGGAGCACTTTAAtgtgttcatcaaa
accaaACCAACTTCATTTGCAAAAATCACAGTGTCAAGcacaaacaaaca
attttccGCAATACGTCAAAACTTTCTCGATTATTTTCACAACAAGGAGC
CCGTCACAATCAAGTCATGCTTGCCCTTGAATGgtagaaactttttcaat
gcaTATTCCTTTGTACAACCTTGTGAAAGGCAGTTAACTTTTAACTTAAA
TGATGCGGATGCTACACCATTAAACGAGATCGAATCAAATTCAATCACTG
AGTCCATAGTTGGTAAACTCAGGTTCCGTGGCCCTGTTCAAGTGAAGCCC
TATACCACTAGGGGTGGCAAGGCAAGAACGGACAAGATGCGGGAATGTGT
TATCTCCGATGGATCCACCTGCCTTTNN

Coding sequence (CDS) from alignment at sc0001391:64903..66980+

>TCONS_00035937 ID=TCONS_00035937|Name=TCONS_00035937|organism=Clytia hemisphaerica|type=CDS|length=2322bp|location=Sequence derived from alignment at sc0001391:64903..66980+ (Clytia hemisphaerica)
ATGCGATCGTTTTTTGGAGGCAAAAAGACTTACGATTTAAATGGAGGCAA
GTGGATATCAATCAATATTTCGAAAAGTACCAGTCAAATCTCTTTGAAAT
TTATGAATAATTCTAAACCGTTTTGTGGTAAAGATGAGAGTTTTGAGATG
CCATGTGAAGTAAAGAATAGTGAAAGAGCTGGTACAGATGATGAAAgcaa
aaaagaacaaacaaaaagaaaagctAGCAGTGCACCGACTGGTTCACCAA
AGAaagccaaattgttttgctcgggAACAGCATACCAACCCAAAGCTCCT
GCAAATGCGATAGATTTTGCTGGCTTCATTGCATGTGTGTCACCCGTACG
GTTATCCTATCAATCGAAGAAGGAGCACTTTAAtgtgttcatcaaaacca
aACCAACTTCATTTGCAAAAATCACAGTGTCAAGcacaaacaaacaattt
tccGCAATACGTCAAAACTTTCTCGATTATTTTCACAACAAGGAGCCCGT
CACAATCAAGTCATGCTTGCCCTTGAATGgtagaaactttttcaatgcaT
ATTCCTTTGTACAACCTTGTGAAAGGCAGTTAACTTTTAACTTAAATGAT
GCGGATGCTACACCATTAAACGAGATCGAATCAAATTCAATCACTGAGTC
CATAGTTGGTAAACTCAGGTTCCGTGGCCCTGTTCAAGTGAAGCCCTATA
CCACTAGGGGTGGCAAGGCAAGAACGGACAAGATGCGGGAATGTGTTATC
TCCGATGGATCCACCTGCCTTTNNATGCGATCGTTTTTTGGAGGCAAAAA
GACTTACGATTTAAATGGAGGCAAGTGGATATCAATCAATATTTCGAAAA
GTACCAGTCAAATCTCTTTGAAATTTATGAATAATTCTAAACCGTTTTGT
GGTAAAGATGAGAGTTTTGAGATGCCATGTGAAGTAAAGAATAGTGAAAG
AGCTGGTACAGATGATGAAAgcaaaaaagaacaaacaaaaagaaaagctA
GCAGTGCACCGACTGGTTCACCAAAGAaagccaaattgttttgctcgggA
ACAGCATACCAACCCAAAGCTCCTGCAAATGCGATAGATTTTGCTGGCTT
CATTGCATGTGTGTCACCCGTACGGTTATCCTATCAATCGAAGAAGGAGC
ACTTTAAtgtgttcatcaaaaccaaACCAACTTCATTTGCAAAAATCACA
GTGTCAAGcacaaacaaacaattttccGCAATACGTCAAAACTTTCTCGA
TTATTTTCACAACAAGGAGCCCGTCACAATCAAGTCATGCTTGCCCTTGA
ATGgtagaaactttttcaatgcaTATTCCTTTGTACAACCTTGTGAAAGG
CAGTTAACTTTTAACTTAAATGATGCGGATGCTACACCATTAAACGAGAT
CGAATCAAATTCAATCACTGAGTCCATAGTTGGTAAACTCAGGTTCCGTG
GCCCTGTTCAAGTGAAGCCCTATACCACTAGGGGTGGCAAGGCAAGAACG
GACAAGATGCGGGAATGTGTTATCTCCGATGGATCCACCTGCCTTTNNAT
GCGATCGTTTTTTGGAGGCAAAAAGACTTACGATTTAAATGGAGGCAAGT
GGATATCAATCAATATTTCGAAAAGTACCAGTCAAATCTCTTTGAAATTT
ATGAATAATTCTAAACCGTTTTGTGGTAAAGATGAGAGTTTTGAGATGCC
ATGTGAAGTAAAGAATAGTGAAAGAGCTGGTACAGATGATGAAAgcaaaa
aagaacaaacaaaaagaaaagctAGCAGTGCACCGACTGGTTCACCAAAG
AaagccaaattgttttgctcgggAACAGCATACCAACCCAAAGCTCCTGC
AAATGCGATAGATTTTGCTGGCTTCATTGCATGTGTGTCACCCGTACGGT
TATCCTATCAATCGAAGAAGGAGCACTTTAAtgtgttcatcaaaaccaaA
CCAACTTCATTTGCAAAAATCACAGTGTCAAGcacaaacaaacaattttc
cGCAATACGTCAAAACTTTCTCGATTATTTTCACAACAAGGAGCCCGTCA
CAATCAAGTCATGCTTGCCCTTGAATGgtagaaactttttcaatgcaTAT
TCCTTTGTACAACCTTGTGAAAGGCAGTTAACTTTTAACTTAAATGATGC
GGATGCTACACCATTAAACGAGATCGAATCAAATTCAATCACTGAGTCCA
TAGTTGGTAAACTCAGGTTCCGTGGCCCTGTTCAAGTGAAGCCCTATACC
ACTAGGGGTGGCAAGGCAAGAACGGACAAGATGCGGGAATGTGTTATCTC
CGATGGATCCACCTGCCTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021102XLOC_021102Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035937-proteinTCONS_00035937-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035937-exon-sc0001391-1491911889:64903..65241TCONS_00035937-exon-sc0001391-1491911889:64903..65241Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1510915933:64903..65241TCONS_00035937-exon-sc0001391-1510915933:64903..65241Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1575043694:64903..65241TCONS_00035937-exon-sc0001391-1575043694:64903..65241Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1491911889:65905..66108TCONS_00035937-exon-sc0001391-1491911889:65905..66108Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1510915933:65905..66108TCONS_00035937-exon-sc0001391-1510915933:65905..66108Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1575043694:65905..66108TCONS_00035937-exon-sc0001391-1575043694:65905..66108Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1491911889:66520..66980TCONS_00035937-exon-sc0001391-1491911889:66520..66980Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1510915933:66520..66980TCONS_00035937-exon-sc0001391-1510915933:66520..66980Clytia hemisphaericaexon
TCONS_00035937-exon-sc0001391-1575043694:66520..66980TCONS_00035937-exon-sc0001391-1575043694:66520..66980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001391supercontigsc0001391:64903..66980 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0121367	0.709314	0	0.507505	0	0	0.277136	0	0	0	0	0.353582	0	0	0.396782	0.306321	0.192464	0	0.536995	0	0	0	0.272976	0	0.18754	0.340996	0.43549	0.350198	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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