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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035936 ID=TCONS_00035936|Name=TCONS_00035936|organism=Clytia hemisphaerica|type=transcript|length=787bp
ttgaTGTCTAATCTTGTCATGAATGAATGTTGGAATGTTTTGTCTTCACT
TTAATCGCTGTATTTGTTTGAGTTGAGTTTGAGTCAGAGTTGTGTTAGAG
CTATTTTGGTCCTTTCAAATTGATTCTAAACCGTTTTGTGGTAAAGATGA
GAGTTTTGAGATGCCATGTGAAGTAAAGAATAGTGAAAGAGCTGGTACAG
ATGATGAAAgcaaaaaagaacaaacaaaaagaaaagctAGCAGTGCACCG
ACTGGTTCACCAAAGAaagccaaattgttttgctcgggAACAGCATACCA
ACCCAAAGCTCCTGCAAATGCGATAGATTTTGCTGGCTTCATTGCATGTG
TGTCACCCGTACGGTTATCCTATCAATCGAAGAAGGAGCACTTTAAtgtg
ttcatcaaaaccaaACCAACTTCATTTGCAAAAATCACAGTGTCAAGcac
aaacaaacaattttccGCAATACGTCAAAACTTTCTCGATTATTTTCACA
ACAAGGAGCCCGTCACAATCAAGTCATGCTTGCCCTTGAATGgtagaaac
tttttcaatgcaTATTCCTTTGTACAACCTTGTGAAAGGCAGTTAACTTT
TAACTTAAATGATGCGGATGCTACACCATTAAACGAGATCGAATCAAATT
CAATCACTGAGTCCATAGTTGGTAAACTCAGGTTCCGTGGCCCTGTTCAA
GTGAAGCCCTATACCACTAGGGGTGGCAAGGCAAGAACGGACAAGATGCG
GGAATGTGTTATCTCCGATGGATCCACCTGCCTTTNN Run BLAST on NCBI transcript from alignment at sc0001391:64889..66980+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035936 ID=TCONS_00035936|Name=TCONS_00035936|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at sc0001391:64889..66980+ (Clytia hemisphaerica)
ttgaTGTCTAATCTTGTCATGAATGAATGTTGGAATGTTTTGTCTTCACT
TTAATCGCTGTATTTGTTTGAGTTGAGTTTGAGTCAGAGTTGTGTTAGAG
CTATTTTGGTCCTTTCAAATTGGTACCAattatatttgtttgttttgact
tttgataaaaatgctttttttccattgcagttttgcctatagacgggttt
caatgttttgatttttgtgcgGGCGGTCCAATGCGGGCGGGCCAATGCGA
TCGTTTTTTGGAGGCAAAAAGACTTACGATTTAAATGGAGGCAAGTGGAT
ATCAATCAATATTTCGAAAAGTACCAGTCAAATCTCTTTGAAATTTATGA
ATAGTAAGCCTATATACCTCTCATAAAACATACTGAAATTTCTATTCAAA
AGTCCTACCAGAAACTTCGTTACAACAAAAAATCTGCTTGCCTCCagcta
atgttatggtctttttgCCTCCAAAAAATCGGACggaaagtcacgtgact
aaacaAATGACGTTTCACGAAACCCGTCTATAGCGTCACTATTTTAATCg
taaagttttcccgggcctaatcctcTTCATCCCGTCTCGTAATCTTAAAa
ataatatactgttcttttgaAAGGACTAATAATGGCTGTGCCCTAAAAGA
TGTCATGGGATCCCAGGCTTAGCCCCCTACTATATGCAAACAAATGTGGA
TTATAGAAAGGCTGAAttgcttttttcgaaattttttctttgcccAAATT
CATTTTACACTATTTtgagtctaaaaagtttgaaatttgtgTGGTTAGGG
GGATATAGTATGTATgcgcatttttttcaaatgacgTTTTTTAAACAATA
CATAGACAAAAATGCCTCTGGAGTTGAATTTTTGAATGCCCCTgtggaat
ttatttatttcagtttatttttgaGTTGGGGGCTAAAGAATATGGGAAAT
AAAAATGCAATGctaatttaaacatttttagatGACAGTAAATATCATGC
ACTTATTTTACCTTAGATTCTAAACCGTTTTGTGGTAAAGATGAGAGTTT
TGAGATGCCATGTGAAGTAAAGAATAGTGAAAGAGCTGGTACAGATGATG
AAAgcaaaaaagaacaaacaaaaagaaaagctAGCAGTGCACCGACTGGT
TCACCAAAGAaagccaaattgttttgctcgggAACAGCATACCAACCCAA
AGCTCCTGCAAATGCGATAGGTATTGTTTTTGGTTAAGAATTATactaat
ttttaaatttctggcTGTCAAAATGTTAActagaaaatttgaacaaatat
tttgaCGCCCTCACCAAATTTCTGAAAGAACCTAATCTAGACTTATGGTA
TCATTAAGTTGGTACTAATTTTTATagaactaatttttgtggtAACTAAA
TATTGTGATTTTGGGTGTCTACCGCGCAGTTTTTAATTGAAATCTAtaaa
aacccctaggaaaatgaaagaatttcagAATTTCAGCAAAAAGTGTATGT
CAACAGCAAAATTTGttctgccaaattaagttttgacccctctagaaact
gaGCAATCTGGTTTGGTGAATGTAgaaatttctgtttttttgtttaaaca
aattgaccaatttcttttttccttatTCAAGATTTTGCTGGCTTCATTGC
ATGTGTGTCACCCGTACGGTTATCCTATCAATCGAAGAAGGAGCACTTTA
AtgtgttcatcaaaaccaaACCAACTTCATTTGCAAAAATCACAGTGTCA
AGcacaaacaaacaattttccGCAATACGTCAAAACTTTCTCGATTATTT
TCACAACAAGGAGCCCGTCACAATCAAGTCATGCTTGCCCTTGAATGgta
gaaactttttcaatgcaTATTCCTTTGTACAACCTTGTGAAAGGCAGTTA
ACTTTTAACTTAAATGATGCGGATGCTACACCATTAAACGAGATCGAATC
AAATTCAATCACTGAGTCCATAGTTGGTAAACTCAGGTTCCGTGGCCCTG
TTCAAGTGAAGCCCTATACCACTAGGGGTGGCAAGGCAAGAACGGACAAG
ATGCGGGAATGTGTTATCTCCGATGGATCCACCTGCCTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035936-exon-sc0001391-1491911889:64889..65010 | TCONS_00035936-exon-sc0001391-1491911889:64889..65010 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1510915933:64889..65010 | TCONS_00035936-exon-sc0001391-1510915933:64889..65010 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1575043694:64889..65010 | TCONS_00035936-exon-sc0001391-1575043694:64889..65010 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1491911889:65905..66108 | TCONS_00035936-exon-sc0001391-1491911889:65905..66108 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1510915933:65905..66108 | TCONS_00035936-exon-sc0001391-1510915933:65905..66108 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1575043694:65905..66108 | TCONS_00035936-exon-sc0001391-1575043694:65905..66108 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1491911889:66520..66980 | TCONS_00035936-exon-sc0001391-1491911889:66520..66980 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1510915933:66520..66980 | TCONS_00035936-exon-sc0001391-1510915933:66520..66980 | Clytia hemisphaerica | exon |
| TCONS_00035936-exon-sc0001391-1575043694:66520..66980 | TCONS_00035936-exon-sc0001391-1575043694:66520..66980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001391 | supercontig | sc0001391:64889..66980 + |
Blast
The following BLAST results are available for this feature:
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