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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035935 ID=TCONS_00035935|Name=TCONS_00035935|organism=Clytia hemisphaerica|type=transcript|length=1684bp
ggtttgaTGTCTAATCTTGTCATGAATGAATGTTGGAATGTTTTGTCTTC
ACTTTAATCGCTGTATTTGTTTGAGTTGAGTTTGAGTCAGAGTTGTGTTA
GAGCTATTTTGGTCCTTTCAAATTGGTACCAattatatttgtttgttttg
acttttgataaaaatgctttttttccattgcagttttgcctatagacggg
tttcaatgttttgatttttgtgcgGGCGGTCCAATGCGGGCGGGCCAATG
CGATCGTTTTTTGGAGGCAAAAAGACTTACGATTTAAATGGAGGCAAGTG
GATATCAATCAATATTTCGAAAAGTACCAGTCAAATCTCTTTGAAATTTA
TGAATAGTAAGCCTATATACCTCTCATAAAACATACTGAAATTTCTATTC
AAAAGTCCTACCAGAAACTTCGTTACAACAAAAAATCTGCTTGCCTCCag
ctaatgttatggtctttttgCCTCCAAAAAATCGGACggaaagtcacgtg
actaaacaAATGACGTTTCACGAAACCCGTCTATAGCGTCACTATTTTAA
TCgtaaagttttcccgggcctaatcctcTTCATCCCGTCTCGTAATCTTA
AAaataatatactgttcttttgaAAGGACTAATAATGGCTGTGCCCTAAA
AGATGTCATGGGATCCCAGGCTTAGCCCCCTACTATATGCAAACAAATGT
GGATTATAGAAAGGCTGAAttgcttttttcgaaattttttctttgcccAA
ATTCATTTTACACTATTTtgagtctaaaaagtttgaaatttgtgTGGTTA
GGGGGATATAGTATGTATgcgcatttttttcaaatgacgTTTTTTAAACA
ATACATAGACAAAAATGCCTCTGGAGTTGAATTTTTGAATGCCCCTgtgg
aatttatttatttcagtttatttttgaGTTGGGGGCTAAAGAATATGGGA
AATAAAAATGCAATGctaatttaaacatttttagatGACAGTAAATATCA
TGCACTTATTTTACCTTAGATTCTAAACCGTTTTGTGGTAAAGATGAGAG
TTTTGAGATGCCATGTGAAGTAAAGAATAGTGAAAGAGCTGGTACAGATG
ATGAAAgcaaaaaagaacaaacaaaaagaaaagctAGCAGTGCACCGACT
GGTTCACCAAAGAaagccaaattgttttgctcgggAACAGCATACCAACC
CAAAGCTCCTGCAAATGCGATAGATTTTGCTGGCTTCATTGCATGTGTGT
CACCCGTACGGTTATCCTATCAATCGAAGAAGGAGCACTTTAAtgtgttc
atcaaaaccaaACCAACTTCATTTGCAAAAATCACAGTGTCAAGcacaaa
caaacaattttccGCAATACGTCAAAACTTTCTCGATTATTTTCACAACA
AGGAGCCCGTCACAATCAAGTCATGCTTGCCCTTGAATGgtagaaacttt
ttcaatgcaTATTCCTTTGTACAACCTTGTGAAAGGCAGTTAACTTTTAA
CTTAAATGATGCGGATGCTACACCATTAAACGAGATCGAATCAAATTCAA
TCACTGAGTCCATAGTTGGTAAACTCAGGTTCCGTGGCCCTGTTCAAGTG
AAGCCCTATACCACTAGGGGTGGCAAGGCAAGAACGGACAAGATGCGGGA
ATGTGTTATCTCCGATGGATCCACCTGCCTTTNN Run BLAST on NCBI transcript from alignment at sc0001391:64886..66980+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035935 ID=TCONS_00035935|Name=TCONS_00035935|organism=Clytia hemisphaerica|type=transcript|length=2095bp|location=Sequence derived from alignment at sc0001391:64886..66980+ (Clytia hemisphaerica)
ggtttgaTGTCTAATCTTGTCATGAATGAATGTTGGAATGTTTTGTCTTC
ACTTTAATCGCTGTATTTGTTTGAGTTGAGTTTGAGTCAGAGTTGTGTTA
GAGCTATTTTGGTCCTTTCAAATTGGTACCAattatatttgtttgttttg
acttttgataaaaatgctttttttccattgcagttttgcctatagacggg
tttcaatgttttgatttttgtgcgGGCGGTCCAATGCGGGCGGGCCAATG
CGATCGTTTTTTGGAGGCAAAAAGACTTACGATTTAAATGGAGGCAAGTG
GATATCAATCAATATTTCGAAAAGTACCAGTCAAATCTCTTTGAAATTTA
TGAATAGTAAGCCTATATACCTCTCATAAAACATACTGAAATTTCTATTC
AAAAGTCCTACCAGAAACTTCGTTACAACAAAAAATCTGCTTGCCTCCag
ctaatgttatggtctttttgCCTCCAAAAAATCGGACggaaagtcacgtg
actaaacaAATGACGTTTCACGAAACCCGTCTATAGCGTCACTATTTTAA
TCgtaaagttttcccgggcctaatcctcTTCATCCCGTCTCGTAATCTTA
AAaataatatactgttcttttgaAAGGACTAATAATGGCTGTGCCCTAAA
AGATGTCATGGGATCCCAGGCTTAGCCCCCTACTATATGCAAACAAATGT
GGATTATAGAAAGGCTGAAttgcttttttcgaaattttttctttgcccAA
ATTCATTTTACACTATTTtgagtctaaaaagtttgaaatttgtgTGGTTA
GGGGGATATAGTATGTATgcgcatttttttcaaatgacgTTTTTTAAACA
ATACATAGACAAAAATGCCTCTGGAGTTGAATTTTTGAATGCCCCTgtgg
aatttatttatttcagtttatttttgaGTTGGGGGCTAAAGAATATGGGA
AATAAAAATGCAATGctaatttaaacatttttagatGACAGTAAATATCA
TGCACTTATTTTACCTTAGATTCTAAACCGTTTTGTGGTAAAGATGAGAG
TTTTGAGATGCCATGTGAAGTAAAGAATAGTGAAAGAGCTGGTACAGATG
ATGAAAgcaaaaaagaacaaacaaaaagaaaagctAGCAGTGCACCGACT
GGTTCACCAAAGAaagccaaattgttttgctcgggAACAGCATACCAACC
CAAAGCTCCTGCAAATGCGATAGGTATTGTTTTTGGTTAAGAATTATact
aatttttaaatttctggcTGTCAAAATGTTAActagaaaatttgaacaaa
tattttgaCGCCCTCACCAAATTTCTGAAAGAACCTAATCTAGACTTATG
GTATCATTAAGTTGGTACTAATTTTTATagaactaatttttgtggtAACT
AAATATTGTGATTTTGGGTGTCTACCGCGCAGTTTTTAATTGAAATCTAt
aaaaacccctaggaaaatgaaagaatttcagAATTTCAGCAAAAAGTGTA
TGTCAACAGCAAAATTTGttctgccaaattaagttttgacccctctagaa
actgaGCAATCTGGTTTGGTGAATGTAgaaatttctgtttttttgtttaa
acaaattgaccaatttcttttttccttatTCAAGATTTTGCTGGCTTCAT
TGCATGTGTGTCACCCGTACGGTTATCCTATCAATCGAAGAAGGAGCACT
TTAAtgtgttcatcaaaaccaaACCAACTTCATTTGCAAAAATCACAGTG
TCAAGcacaaacaaacaattttccGCAATACGTCAAAACTTTCTCGATTA
TTTTCACAACAAGGAGCCCGTCACAATCAAGTCATGCTTGCCCTTGAATG
gtagaaactttttcaatgcaTATTCCTTTGTACAACCTTGTGAAAGGCAG
TTAACTTTTAACTTAAATGATGCGGATGCTACACCATTAAACGAGATCGA
ATCAAATTCAATCACTGAGTCCATAGTTGGTAAACTCAGGTTCCGTGGCC
CTGTTCAAGTGAAGCCCTATACCACTAGGGGTGGCAAGGCAAGAACGGAC
AAGATGCGGGAATGTGTTATCTCCGATGGATCCACCTGCCTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035935-exon-sc0001391-1491911889:64886..66108 | TCONS_00035935-exon-sc0001391-1491911889:64886..66108 | Clytia hemisphaerica | exon |
| TCONS_00035935-exon-sc0001391-1510915933:64886..66108 | TCONS_00035935-exon-sc0001391-1510915933:64886..66108 | Clytia hemisphaerica | exon |
| TCONS_00035935-exon-sc0001391-1575043694:64886..66108 | TCONS_00035935-exon-sc0001391-1575043694:64886..66108 | Clytia hemisphaerica | exon |
| TCONS_00035935-exon-sc0001391-1491911889:66520..66980 | TCONS_00035935-exon-sc0001391-1491911889:66520..66980 | Clytia hemisphaerica | exon |
| TCONS_00035935-exon-sc0001391-1510915933:66520..66980 | TCONS_00035935-exon-sc0001391-1510915933:66520..66980 | Clytia hemisphaerica | exon |
| TCONS_00035935-exon-sc0001391-1575043694:66520..66980 | TCONS_00035935-exon-sc0001391-1575043694:66520..66980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001391 | supercontig | sc0001391:64886..66980 + |
Blast
The following BLAST results are available for this feature:
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