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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035934 ID=TCONS_00035934|Name=TCONS_00035934|organism=Clytia hemisphaerica|type=transcript|length=725bp
AATACTTCCTTGAAAGTCAGATTCTTTAAATATGTCCTTGTGATAAAACT
TTCGGAAAGTTGAGTCAGATTTCCACTTcccctttttgaaaatttctgtt
aGAGAGATACCTGAGGAAGAGGCTTTCGAGGTTGAAGCTGCACTAGTCGA
GTGagctttaaaagtttttgtatCAATGCCACATAGCCCAAGCATGTCTA
CTAACCACCTTGAGACTGTACATGACTTAACCTAATGTCTGACAAACACA
GAGACTGACATCTCTGTCAGAAACTTTAAATTCCATCGTAGGTACTTTTT
GACCTGGTTTCCAGGTTTTTGAAACTAGAGAAAAAGTGAAGACGTAAACG
TCAGGTTGTTTCAGTAGAAAATCGATATCCAAATTTGTTATTTCAGAAAC
TCTTGAGGCTTCTATTAAAGATAGCAAGGTTACCAATTTATAAGTAAGTA
ATTTGTCAGAAATTAAATCATCAATAGGAAGGAAGAGTCTCAATGAATTC
TAATGCTGTTTCAACATCCCAAACGAAACTATATCGTGGCAATGGTGGAC
TTTCATTACAAATCCCTGTCAAAAGACTTGATACTCTAGGATGCTTACCA
ACCAAAATGCCTTTAATCGGCTCATgatatagtagagggcattttgtaaa
atcgctcgaatgttttgatcaaagcacttgttatacatttttggaaagct
aaggggtaggggaatcgaaattaca Run BLAST on NCBI transcript from alignment at sc0001391:18117..20899+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035934 ID=TCONS_00035934|Name=TCONS_00035934|organism=Clytia hemisphaerica|type=transcript|length=2783bp|location=Sequence derived from alignment at sc0001391:18117..20899+ (Clytia hemisphaerica)
AATACTTCCTTGAAAGTCAGATTCTTTAAATATGTCCTTGTGATAAAACT
TTCGGAAAGTTGAGTCAGATTTCCACTTcccctttttgaaaatttctgtt
aGAGAGATACCTGAGGAAGAGGCTTTCGAGGTTGAAGCTGCACTAGTCGA
GTGagctttaaaagtttttgtatCAATGCCACATAGCCCAAGCATGTCTA
CTAACCACCTTGAGACTGTACATGACTTAACCTAATGTCTGACAAACACA
GAGACTGACATCTCTGTCAGAAACTTTAAATTCCATCGTAGGTACTTTTT
GACCTGGTTTCCAGGTTTTTGAAACTAGAGAAAAAGTGAAGACGTAAACG
TCAGGTTgttatggaagccgagaagggtcatttggtgatttctttcaaaa
tatgaCGAGATTTCTTTTAagttgtcgagatttctttcaaactgtcgagt
tttctttcaaactgtcgagatttgTTTCAAACTGtcaagatttctttcaa
actgtcgagatttccTTTAAACTGTCGAGCTTTCAATAAGTGTCgcgatt
tcatttttttccaaaaaaaatgtagAGATTCCATCATCAAAACCGCGGGA
ACATAAACCAAACGCAGGACATCTCCACACGCGGGAAAGAAAAATAGGAA
GCACCAATCCAGTTGGAGTTAACTGTAAACTACTCCGAAGATAATGGCTT
TATTATCTTTCTTTGAAGTAATTGATAATCTAATTTGTGTAACCGCGACG
TTGATGCGACCACCAATTTTCAATTCTCTGGTTATTTACAGATTAACCAT
AACGGTGAGCATTGATACCGTTATGAATGTGGGACTGGATTCTAGCCACG
ACACCATTTTCAGTACCACGATCGGTTTGTACAACCCTTGGAAGCACTTT
GAATTCTTTAATTGCATTGATGAAAAAGTTAGCCGGGATATTTGGGTTGT
TATTTGACTTGCCATATGATCTTTCTGGAAAAACCATCCACACAACCATG
AATGGGTCCGTAGGGTTTCAACTTGTCGTAGCCATCTATATGCCACACGT
CATTAGGGCCATCAGATTAATAAACACGCCTTCTTAACTTTCTAGCCTTC
CTCATTCCGGTGCCCTCAGGATCTATCTCTCTTAAGAGTCTCATTACAGT
GTCTCTAGGAGTTGTTATCCCATACGTAGTCCGTAATTTATTCCGCATTC
CTCGATAGCCAAGTTGGGAGCCTGGCCCTTCAATCTCATTACTTATGATT
TGCCGAAGTTGATCGTCGCTGACTTCACCACCAGCTTTACTTAGCCCATA
ATCTCTCAGTCTTCTTTTCAATGTGCATAGACTTATATTCAACGCATGGT
TATGAGccgaaaacaataaaattgattcGGATTGTAAGCCCCTTCTGAAA
TAGTACTCAATTATATCCCTTTCTCTTTCAAGAGTGTTGACGATAATGTT
CCGCTTTTGTGTGCCACAATTGCCACAAAAGATGTCCCTAATTTCATTGC
CACATCTATGGCAAAACATCGTTAAAGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtctcgacagtttgaaagaaatctcgacaac
tTGAAGGAAATCTCGACAGATTCTGAAAGAAATCGCCAGATGACCTTTCT
CGGCTTCCATAGGTTGTTTCAGTAGAAAATCGATATCCAAATTTGTTATT
TCAGAAACTCTTGAGGCTTCTATTAAAGATAGCAAGGTTACCAATTTATA
AGTAAGTAATTTGTCAGAAATTAAATCATCAATAGGAAGGAAGAGTCTCA
ATGAATTCTAATGCTGTTTCAACATCCCAAACGAAACTATATCGTGGCAA
TGGTGGACTTTCATTACAAATCCCTGTCAAAAGACTTGATACTCTAGGAT
GCTTACCAACCAAAATGCCTTTAATCGGCTCATgatatagtagagggcat
tttgtaaaatcgctcgaatgttttgatcaaagcacttgttatacattttt
ggaaagctaaggggtaggggaatcgaaattaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035934-exon-sc0001391-1491911889:18117..18470 | TCONS_00035934-exon-sc0001391-1491911889:18117..18470 | Clytia hemisphaerica | exon |
| TCONS_00035934-exon-sc0001391-1510915933:18117..18470 | TCONS_00035934-exon-sc0001391-1510915933:18117..18470 | Clytia hemisphaerica | exon |
| TCONS_00035934-exon-sc0001391-1575043694:18117..18470 | TCONS_00035934-exon-sc0001391-1575043694:18117..18470 | Clytia hemisphaerica | exon |
| TCONS_00035934-exon-sc0001391-1491911889:20529..20899 | TCONS_00035934-exon-sc0001391-1491911889:20529..20899 | Clytia hemisphaerica | exon |
| TCONS_00035934-exon-sc0001391-1510915933:20529..20899 | TCONS_00035934-exon-sc0001391-1510915933:20529..20899 | Clytia hemisphaerica | exon |
| TCONS_00035934-exon-sc0001391-1575043694:20529..20899 | TCONS_00035934-exon-sc0001391-1575043694:20529..20899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001391 | supercontig | sc0001391:18117..20899 + |
Blast
The following BLAST results are available for this feature:
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