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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035920 ID=TCONS_00035920|Name=TCONS_00035920|organism=Clytia hemisphaerica|type=transcript|length=1824bpRun BLAST on NCBI transcript from alignment at sc0001387:28310..52871- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035920 ID=TCONS_00035920|Name=TCONS_00035920|organism=Clytia hemisphaerica|type=transcript|length=24562bp|location=Sequence derived from alignment at sc0001387:28310..52871- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00035920 vs. Swiss-Prot (Human)
Match: DPOG1 (DNA polymerase subunit gamma-1 OS=Homo sapiens GN=POLG PE=1 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 3.783e-75 Identity = 124/189 (65.61%), Postives = 153/189 (80.95%), Query Frame = 2
Query: 158 GVILPQIITAGTVTRRAVEPTWLTASNPLRDRIGSELKSMVRPPPGYSLVGADVDCQELWIASVLGDAQFAQIHGCTASSWMTLQGKKSEQTDLHSKTADTIGMSRDQAKIFNYGRVYGAGESFAVRLLMQFNHNLTQREAENTAAKLYESTKGIKRYRLNGRGKTLAEELEIMLDFNDLVSYVSLKRL 724
G ILPQ++TAGT+TRRAVEPTWLTASN DR+GSELK+MV+ PPGY+LVGADVD QELWIA+VLGDA FA +HGCTA WMTLQG+KS TDLHSKTA T+G+SR+ AKIFNYGR+YGAG+ FA RLLMQFNH LTQ+EA A ++Y +TKG++ YRL+ G+ L EL + +D + ++SL+ L
Sbjct: 838 GAILPQVVTAGTITRRAVEPTWLTASNARPDRVGSELKAMVQAPPGYTLVGADVDSQELWIAAVLGDAHFAGMHGCTAFGWMTLQGRKSRGTDLHSKTATTVGISREHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGEWLVRELNLPVDRTE-GGWISLQDL 1025 HSP 2 Score: 149.828 bits (377), Expect = 2.279e-51 Identity = 66/85 (77.65%), Postives = 76/85 (89.41%), Query Frame = 1
Query: 796 KYKTSRVNWVVQSSAVDYLHLMLTSMAWLIKEYNIDARFCVSIHDEVRYIVKDKDRYRLALALQITNLLTRSMFAYKLNLNDLPQ 1050
++ TSRVNWVVQSSAVDYLHLML +M WL +E+ ID RFC+SIHDEVRY+V+++DRYR ALALQITNLLTR MFAYKL LNDLPQ
Sbjct: 1091 EFMTSRVNWVVQSSAVDYLHLMLVAMKWLFEEFAIDGRFCISIHDEVRYLVREEDRYRAALALQITNLLTRCMFAYKLGLNDLPQ 1175 HSP 3 Score: 72.4034 bits (176), Expect = 2.279e-51 Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query: 1043 YHSSVDIDKVLRKEVDLDCVTPSNPHGLQEGHGIGKGESLDIYQLLERTRG 1195
+ S+VDID+ LRKEV +DC TPSNP G++ +GI +GE+LDIYQ++E T+G
Sbjct: 1179 FFSAVDIDRCLRKEVTMDCKTPSNPTGMERRYGIPQGEALDIYQIIELTKG 1229 The following BLAST results are available for this feature:
BLAST of TCONS_00035920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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