TCONS_00035907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035907
Unique NameTCONS_00035907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035907 ID=TCONS_00035907|Name=TCONS_00035907|organism=Clytia hemisphaerica|type=transcript|length=379bp
Ngccaggcccaattgattgtttggttcgtgtcctagaagctttgaaaaat
gggtcggtcggtcggtcggtagctaaaattggaaccttttttcattttcc
caccagaaacctcaatttttagaattcCTCAAGCAATCAGCGCAATCCTG
GAATCCAACCGCAAATGTATAAAGAAATAGCCTAAAGCCTAGATCCACAA
AGACACGCATCGCAATCGTAAGATAAGAGGGCGGTCAATGAAAAATCTCG
TCACTTCCCCGACCGTTAAGAGTGACCACCCCATAGTCTTCATTTCGACC
TATATAATTGCGTgtaataatcgcttgtggttgtAATTTACGCATGCGCA
TTATATGTGATGTAGAACAATTATATAAC
Run BLAST on NCBI

transcript from alignment at sc0001387:622..1191+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035907 ID=TCONS_00035907|Name=TCONS_00035907|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0001387:622..1191+ (Clytia hemisphaerica)
Ngccaggcccaattgattgtttggttcgtgtcctagaagctttgaaaaat
gggtcggtcggtcggtcggtagctaaaattggaaccttttttcattttcc
caccagaaacctcaatttttagaattcCTCAAGCAATCAGCGCAATCCTG
GAATCCAACCGCAAATGTATAAAGAAATAGCCTAAAGCCTAGATCCACAA
AGACACGCATCGCAATCGTAAGATAAGAGGGCGGTCAATGAAAAATCTCG
TATtgtaaagattacatcattaatagcataattagtataattatgctatt
gtttgggtctccaaccctaaccctaactggaaagatcgatattcttataa
aaagtgtttcttataaaacatcgaCATTTATAAGaagtgtttcttataaa
acgtcgatattcctataaaaaatgtttcttataaggaACCACCACTTCCC
CGACCGTTAAGAGTGACCACCCCATAGTCTTCATTTCGACCTATATAATT
GCGTgtaataatcgcttgtggttgtAATTTACGCATGCGCATTATATGTG
ATGTAGAACAATTATATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021087XLOC_021087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035907-exon-sc0001387-1491911889:622..872TCONS_00035907-exon-sc0001387-1491911889:622..872Clytia hemisphaericaexon
TCONS_00035907-exon-sc0001387-1510915933:622..872TCONS_00035907-exon-sc0001387-1510915933:622..872Clytia hemisphaericaexon
TCONS_00035907-exon-sc0001387-1575043694:622..872TCONS_00035907-exon-sc0001387-1575043694:622..872Clytia hemisphaericaexon
TCONS_00035907-exon-sc0001387-1491911889:1064..1191TCONS_00035907-exon-sc0001387-1491911889:1064..1191Clytia hemisphaericaexon
TCONS_00035907-exon-sc0001387-1510915933:1064..1191TCONS_00035907-exon-sc0001387-1510915933:1064..1191Clytia hemisphaericaexon
TCONS_00035907-exon-sc0001387-1575043694:1064..1191TCONS_00035907-exon-sc0001387-1575043694:1064..1191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001387supercontigsc0001387:622..1191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.417385	0.634682	0	0	1.25268	2.08648	2.22493	2.05113	0.971078	0	1.18408	1.32823	2.08902	2.12075	1.47333	1.47157	1.01085	1.27736	1.0042	0.956608	1.24247	2.12048	0	0.928329	0	1.53667	1.55523	0.313166	0.522723	0.368805
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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