TCONS_00035902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035902
Unique NameTCONS_00035902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035902 ID=TCONS_00035902|Name=TCONS_00035902|organism=Clytia hemisphaerica|type=transcript|length=1829bp
tgtAGGACATCTTTTATTAATAAGCACAAGatatttataatataaaaatg
gCAAAGCAACTTTATTCTGTGAAGATTGAGAATATCAATGAATCTGTTAA
AGAGCCATCGCTGTATGctgctttcaaaaaaaaaggattTGTCAGTATCC
ATTCTGTCGTTATTGGTAAGAACAAAACCCATGCATATGTCAATTTGTTG
AGTGCAAAAGATGCATCACAAGCTGTTCAAAAGTTGCACGAGACATACAT
CAATGGAAACAAAATAAGAGTATCACTTGCTCCACgcaagaattttgaaa
aagtaactGACTGCAAGTATGGAGATCTTTGCTCAAAAAACAAAGAGTGT
CCCTATCGTCACAATGTAGAGGGGAGTGAAATCTGCTCAGACTGGCAATA
CAAACCAGGACGTTGTAACAAAGTCAAATGTCCAAAAAGACATCcatcaa
aaattgaagaagaagaagaagctaAAGatGCTACCCCGCCTTCAActcca
aaagaagaaaaagttgaatCTTCTGGGCAGTCAGAAATTTTCCAATCATT
GGAGAAAAACTGTGAATGTCCTATCTGTCTGGAACGTATGTGTGATCCTC
GAACTTTGACTTGTCATCATTCATTTTGTAAAGAATGCCTTGATGAGACA
GTGCAGGTTGACGACTATGGAATGGCTTCCATAAAGTGCCCCAGTTGTCG
TGAAAACACTTATCTCGAGTCTACTGTATCCAAATTGAAAtgtgatttac
atttgaaaagtaACATTGATCTTCTGATGACCACACAACCTAAGTCCATT
GACACTCCAAAATGCTCCGACAAAAGCTGTGAAAGTGGTGTTCCTGATAG
AGCATGCACGGATTGCTCTCAATTGATATGCAGCAAATCATGTTTAATCA
AACATTATCAAGTTGGAAAATGCGAATGTAAACATCTGGTTGAAATCAGA
TTTAGTGTTAGAGATGGCAACATTGCACCATATTGCCAGCAGCATGAAAC
ATTCGCGAAATATTATTGTACCAATGCTGATTGTCTTCAGTATAATTGTG
TGTTCTGTAAACATCATCTAACACACAGTAATAAAAGTCTTTCAAGTTTG
GGAAAGAAATTTGATGAGGTTTTTGAGAAATGGAAAACAGATGCTATAGA
GCTTCAAACCAATAACCAAAGCACTAAAGATAAAATTCAATCTGCAATGG
ATGAAAAAATTCCAATAGTGCGGAAACACattattgatttcaaatatgaa
ATGATGACAAAAACATGGCTTGCTTTAAACCAAGTTGAGGATGAGCTTTG
CAAAGAATTGGAAAACTCTTGTagatcttataaaaaagaagctAAACAAG
ACCTTCAATCTGCTAAAAAGTTGATTTACGACATTGACAAACTTTCCCAA
AGTacaccattttcaaaaataatgaacTCTCAAAAGTTGCAAAAGTTGCA
TACTGAACTTGATGATAAATGTAAAAAAGAAAGGGACTTTGAAGTAGATT
TCCAGCCTAATCAATACGCATTAGATGACAACCTATTCGACTTTATTGAT
TCCCAAATTGGTATGGTTAAGATTTCTATGAATAAAGATGGTGATGTGAC
AGAAGTAAAGCCACTGTCAAGCTCTATCAAAAATTCTGAACAACTCAAAA
GATTGGAATCTTCAAACACTGATTACAAagattattttcatcaaaacatt
ATTCCACAGTTTCTGCAACAACAATCTGTGAAAGGTAATTATGATCaaaa
atcaattcaattttGAATGAAGCCTGGTAATAAGTGTTCTCTAGATTTTG
GCTAGTGCCTACACCTAGCAGGTTTCCAT
Run BLAST on NCBI

protein sequence of TCONS_00035902-protein

>TCONS_00035902-protein ID=TCONS_00035902-protein|Name=TCONS_00035902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=572bp
MAKQLYSVKIENINESVKEPSLYAAFKKKGFVSIHSVVIGKNKTHAYVNL
LSAKDASQAVQKLHETYINGNKIRVSLAPRKNFEKVTDCKYGDLCSKNKE
CPYRHNVEGSEICSDWQYKPGRCNKVKCPKRHPSKIEEEEEAKDATPPST
PKEEKVESSGQSEIFQSLEKNCECPICLERMCDPRTLTCHHSFCKECLDE
TVQVDDYGMASIKCPSCRENTYLESTVSKLKCDLHLKSNIDLLMTTQPKS
IDTPKCSDKSCESGVPDRACTDCSQLICSKSCLIKHYQVGKCECKHLVEI
RFSVRDGNIAPYCQQHETFAKYYCTNADCLQYNCVFCKHHLTHSNKSLSS
LGKKFDEVFEKWKTDAIELQTNNQSTKDKIQSAMDEKIPIVRKHIIDFKY
EMMTKTWLALNQVEDELCKELENSCRSYKKEAKQDLQSAKKLIYDIDKLS
QSTPFSKIMNSQKLQKLHTELDDKCKKERDFEVDFQPNQYALDDNLFDFI
DSQIGMVKISMNKDGDVTEVKPLSSSIKNSEQLKRLESSNTDYKDYFHQN
IIPQFLQQQSVKGNYDQKSIQF
Run BLAST on NCBI

transcript from alignment at sc0001386:53142..55724-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035902 ID=TCONS_00035902|Name=TCONS_00035902|organism=Clytia hemisphaerica|type=transcript|length=2583bp|location=Sequence derived from alignment at sc0001386:53142..55724- (Clytia hemisphaerica)
TGTAGGACATCTTTTATTAATAAGCACAAGATATTTATAATATAAAAATG
GCAAAGCAACTTTATTCTGTGAAGATTGAGAATATCAATGAATCTGTTAA
AGAGCCATCGCTGTATGCTGCTTTCAAAAAAAAAGGATTTGTCAGTATCC
ATTCTGTCGTTATTGGTAAGAACAAAACCCATGCATATGTCAATTTGTTG
AGTGCAAAAGATGCATCACAAGCTGTTCAAAAGTTGCACGAGACATACAT
CAATGGAAACAAAATAAGAGTATCACTTGCTCCACGCAAGAATTTTGAAA
AAGTAACTGACTGCAAGTATGGAGATCTTTGCTCAAAAAACAAAGTGAGT
ACTGTCCCTTAGTTTTCCCTTCTGGAAAGGTAGCTGATATTTTTTTATTG
CCAAATTGGTAACACTTTGCTGGTTTTGCCGTATCTGAAAGAGAAGAGGT
AATGGAAAATTGAGGCAAGGTTCAATTAATCAGGATATGCAACACTGCAA
TGACCTCTAGAAGTTTTGTAGCTTTTCTTTTTTTCTTTCTAAAATTATCA
TTTCTTACTTGAAAAGATTGGGTTTAGATTGCTATTCATCTTTATATTTA
ATTAACTTCCCTTGTCATTTGTTTTTATATAAAACCCTCTTTTTCAGGAG
TGTCCCTATCGTCACAATGTAGAGGGGAGTGAAATCTGCTCAGACTGGCA
ATACAAACCAGGACGTTGTAACAAAGTCAAATGTCCAAAAAGACATCCAT
CAAAAATTGAAGAAGAAGAAGAAGCTAAAGGTTTGTTATTCAACGAAATT
TGTTTCACATACTTTTTAATGGTCCTTTCGCAAAGCGGTTATTAACCTTG
GTTTCTGCACCAAGGTTCAATTCCCACTCCCAGCGGTTCCCTTGGCAAAT
GAACGGACCTTTGCCCATGCCATGTTACAAAGGGATTGGTTAGTTAGTTG
GCGGTACTGACGGGGCGCTAACAGGAAGAGTCGATAGTTGCAAAAATGGG
CCTCAGAGCCTCCTGCAACTCAATCAAATAGAAAATCAAAATAGAAGTAA
TTATTTGTAGCCATCATTTTTATTTTTGTGTTTTTTTTCTTCATTTCTTA
GATGCTACCCCGCCTTCAACTCCAAAAGAAGAAAAAGTTGAATCTTCTGG
GCAGTCAGAAATTTTCCAATCATTGGAGAAAAACTGTGAATGTCCTATCT
GTCTGGAACGTATGTGTGATCCTCGAACTTTGACTTGTCATCATTCATTT
TGTAAAGAATGCCTTGATGAGACAGTGCAGGTTGACGACTATGGAATGGC
TTCCATAAAGTGCCCCAGTTGTCGTGAAAACACTTATCTCGAGTCTACTG
TATCCAAATTGAAATGTGATTTACATTTGAAAAGTAACATTGATCTTCTG
ATGACCACGTAAGAATTACATTCATTTTACGAAATTTATTCAACATAGAT
TCTAGTCTTTTTTTAGAAGTTTTGAATTTAAAAAAACTAACTGACTGTAT
TCAATTGTATTTACTTTATTATTTTGATTCTGCTTTAGACAACCTAAGTC
CATTGACACTCCAAAATGCTCCGACAAAAGCTGTGAAAGTGGTGTTCCTG
ATAGAGCATGCACGGATTGCTCTCAATTGATATGCAGCAAATCATGTTTA
ATCAAACATTATCAAGTTGGAAAATGCGAATGTAAACATCTGGTTGAAAT
CAGATTTAGTGTTAGAGATGGCAACATTGCACCATATTGCCAGCAGCATG
AAACATTCGCGAAATATTATTGTACCAATGCTGATTGTCTTCAGTATAAT
TGTGTGTTCTGTAAACATCATCTAACACACAGTAATAAAAGTCTTTCAAG
TTTGGGAAAGAAATTTGATGAGGTTTTTGAGAAATGGAAAACAGATGCTA
TAGAGCTTCAAACCAATAACCAAAGCACTAAAGATAAAATTCAATCTGCA
ATGGATGAAAAAATTCCAATAGTGCGGAAACACATTATTGATTTCAAATA
TGAAATGATGACAAAAACATGGCTTGCTTTAAACCAAGTTGAGGATGAGC
TTTGCAAAGAATTGGAAAACTCTTGTAGATCTTATAAAAAAGAAGCTAAA
CAAGACCTTCAATCTGCTAAAAAGTTGATTTACGACATTGACAAACTTTC
CCAAAGTACACCATTTTCAAAAATAATGAACTCTCAAAAGTTGCAAAAGT
TGCATACTGAACTTGATGATAAATGTAAAAAAGAAAGGGACTTTGAAGTA
GATTTCCAGCCTAATCAATACGCATTAGATGACAACCTATTCGACTTTAT
TGATTCCCAAATTGGTATGGTTAAGATTTCTATGAATAAAGATGGTGATG
TGACAGAAGTAAAGCCACTGTCAAGCTCTATCAAAAATTCTGAACAACTC
AAAAGATTGGAATCTTCAAACACTGATTACAAAGATTATTTTCATCAAAA
CATTATTCCACAGTTTCTGCAACAACAATCTGTGAAAGGTAATTATGATC
AAAAATCAATTCAATTTTGAATGAAGCCTGGTAATAAGTGTTCTCTAGAT
TTTGGCTAGTGCCTACACCTAGCAGGTTTCCAT

Coding sequence (CDS) from alignment at sc0001386:53142..55724-

>TCONS_00035902 ID=TCONS_00035902|Name=TCONS_00035902|organism=Clytia hemisphaerica|type=CDS|length=6876bp|location=Sequence derived from alignment at sc0001386:53142..55724- (Clytia hemisphaerica)
ACAACCTAAGTCCATTGACACTCCAAAATGCTCCGACAAAAGCTGTGAAA
GTGGTGTTCCTGATAGAGCATGCACGGATTGCTCTCAATTGATATGCAGC
AAATCATGTTTAATCAAACATTATCAAGTTGGAAAATGCGAATGTAAACA
TCTGGTTGAAATCAGATTTAGTGTTAGAGATGGCAACATTGCACCATATT
GCCAGCAGCATGAAACATTCGCGAAATATTATTGTACCAATGCTGATTGT
CTTCAGTATAATTGTGTGTTCTGTAAACATCATCTAACACACAGTAATAA
AAGTCTTTCAAGTTTGGGAAAGAAATTTGATGAGGTTTTTGAGAAATGGA
AAACAGATGCTATAGAGCTTCAAACCAATAACCAAAGCACTAAAGATAAA
ATTCAATCTGCAATGGATGAAAAAATTCCAATAGTGCGGAAACACATTAT
TGATTTCAAATATGAAATGATGACAAAAACATGGCTTGCTTTAAACCAAG
TTGAGGATGAGCTTTGCAAAGAATTGGAAAACTCTTGTAGATCTTATAAA
AAAGAAGCTAAACAAGACCTTCAATCTGCTAAAAAGTTGATTTACGACAT
TGACAAACTTTCCCAAAGTACACCATTTTCAAAAATAATGAACTCTCAAA
AGTTGCAAAAGTTGCATACTGAACTTGATGATAAATGTAAAAAAGAAAGG
GACTTTGAAGTAGATTTCCAGCCTAATCAATACGCATTAGATGACAACCT
ATTCGACTTTATTGATTCCCAAATTGGTATGGTTAAGATTTCTATGAATA
AAGATGGTGATGTGACAGAAGTAAAGCCACTGTCAAGCTCTATCAAAAAT
TCTGAACAACTCAAAAGATTGGAATCTTCAAACACTGATTACAAAGATTA
TTTTCATCAAAACATTATTCCACAGTTTCTGCAACAACAATCTGTGAAAG
GTAATTATGATCAAAAATCAATTCAATTTTGAATGCTACCCCGCCTTCAA
CTCCAAAAGAAGAAAAAGTTGAATCTTCTGGGCAGTCAGAAATTTTCCAA
TCATTGGAGAAAAACTGTGAATGTCCTATCTGTCTGGAACGTATGTGTGA
TCCTCGAACTTTGACTTGTCATCATTCATTTTGTAAAGAATGCCTTGATG
AGACAGTGCAGGTTGACGACTATGGAATGGCTTCCATAAAGTGCCCCAGT
TGTCGTGAAAACACTTATCTCGAGTCTACTGTATCCAAATTGAAATGTGA
TTTACATTTGAAAAGTAACATTGATCTTCTGATGACCACGAGTGTCCCTA
TCGTCACAATGTAGAGGGGAGTGAAATCTGCTCAGACTGGCAATACAAAC
CAGGACGTTGTAACAAAGTCAAATGTCCAAAAAGACATCCATCAAAAATT
GAAGAAGAAGAAGAAGCTAAAGATGGCAAAGCAACTTTATTCTGTGAAGA
TTGAGAATATCAATGAATCTGTTAAAGAGCCATCGCTGTATGCTGCTTTC
AAAAAAAAAGGATTTGTCAGTATCCATTCTGTCGTTATTGGTAAGAACAA
AACCCATGCATATGTCAATTTGTTGAGTGCAAAAGATGCATCACAAGCTG
TTCAAAAGTTGCACGAGACATACATCAATGGAAACAAAATAAGAGTATCA
CTTGCTCCACGCAAGAATTTTGAAAAAGTAACTGACTGCAAGTATGGAGA
TCTTTGCTCAAAAAACAAAACAACCTAAGTCCATTGACACTCCAAAATGC
TCCGACAAAAGCTGTGAAAGTGGTGTTCCTGATAGAGCATGCACGGATTG
CTCTCAATTGATATGCAGCAAATCATGTTTAATCAAACATTATCAAGTTG
GAAAATGCGAATGTAAACATCTGGTTGAAATCAGATTTAGTGTTAGAGAT
GGCAACATTGCACCATATTGCCAGCAGCATGAAACATTCGCGAAATATTA
TTGTACCAATGCTGATTGTCTTCAGTATAATTGTGTGTTCTGTAAACATC
ATCTAACACACAGTAATAAAAGTCTTTCAAGTTTGGGAAAGAAATTTGAT
GAGGTTTTTGAGAAATGGAAAACAGATGCTATAGAGCTTCAAACCAATAA
CCAAAGCACTAAAGATAAAATTCAATCTGCAATGGATGAAAAAATTCCAA
TAGTGCGGAAACACATTATTGATTTCAAATATGAAATGATGACAAAAACA
TGGCTTGCTTTAAACCAAGTTGAGGATGAGCTTTGCAAAGAATTGGAAAA
CTCTTGTAGATCTTATAAAAAAGAAGCTAAACAAGACCTTCAATCTGCTA
AAAAGTTGATTTACGACATTGACAAACTTTCCCAAAGTACACCATTTTCA
AAAATAATGAACTCTCAAAAGTTGCAAAAGTTGCATACTGAACTTGATGA
TAAATGTAAAAAAGAAAGGGACTTTGAAGTAGATTTCCAGCCTAATCAAT
ACGCATTAGATGACAACCTATTCGACTTTATTGATTCCCAAATTGGTATG
GTTAAGATTTCTATGAATAAAGATGGTGATGTGACAGAAGTAAAGCCACT
GTCAAGCTCTATCAAAAATTCTGAACAACTCAAAAGATTGGAATCTTCAA
ACACTGATTACAAAGATTATTTTCATCAAAACATTATTCCACAGTTTCTG
CAACAACAATCTGTGAAAGGTAATTATGATCAAAAATCAATTCAATTTTG
AATGCTACCCCGCCTTCAACTCCAAAAGAAGAAAAAGTTGAATCTTCTGG
GCAGTCAGAAATTTTCCAATCATTGGAGAAAAACTGTGAATGTCCTATCT
GTCTGGAACGTATGTGTGATCCTCGAACTTTGACTTGTCATCATTCATTT
TGTAAAGAATGCCTTGATGAGACAGTGCAGGTTGACGACTATGGAATGGC
TTCCATAAAGTGCCCCAGTTGTCGTGAAAACACTTATCTCGAGTCTACTG
TATCCAAATTGAAATGTGATTTACATTTGAAAAGTAACATTGATCTTCTG
ATGACCACGAGTGTCCCTATCGTCACAATGTAGAGGGGAGTGAAATCTGC
TCAGACTGGCAATACAAACCAGGACGTTGTAACAAAGTCAAATGTCCAAA
AAGACATCCATCAAAAATTGAAGAAGAAGAAGAAGCTAAAGATGGCAAAG
CAACTTTATTCTGTGAAGATTGAGAATATCAATGAATCTGTTAAAGAGCC
ATCGCTGTATGCTGCTTTCAAAAAAAAAGGATTTGTCAGTATCCATTCTG
TCGTTATTGGTAAGAACAAAACCCATGCATATGTCAATTTGTTGAGTGCA
AAAGATGCATCACAAGCTGTTCAAAAGTTGCACGAGACATACATCAATGG
AAACAAAATAAGAGTATCACTTGCTCCACGCAAGAATTTTGAAAAAGTAA
CTGACTGCAAGTATGGAGATCTTTGCTCAAAAAACAAAACAACCTAAGTC
CATTGACACTCCAAAATGCTCCGACAAAAGCTGTGAAAGTGGTGTTCCTG
ATAGAGCATGCACGGATTGCTCTCAATTGATATGCAGCAAATCATGTTTA
ATCAAACATTATCAAGTTGGAAAATGCGAATGTAAACATCTGGTTGAAAT
CAGATTTAGTGTTAGAGATGGCAACATTGCACCATATTGCCAGCAGCATG
AAACATTCGCGAAATATTATTGTACCAATGCTGATTGTCTTCAGTATAAT
TGTGTGTTCTGTAAACATCATCTAACACACAGTAATAAAAGTCTTTCAAG
TTTGGGAAAGAAATTTGATGAGGTTTTTGAGAAATGGAAAACAGATGCTA
TAGAGCTTCAAACCAATAACCAAAGCACTAAAGATAAAATTCAATCTGCA
ATGGATGAAAAAATTCCAATAGTGCGGAAACACATTATTGATTTCAAATA
TGAAATGATGACAAAAACATGGCTTGCTTTAAACCAAGTTGAGGATGAGC
TTTGCAAAGAATTGGAAAACTCTTGTAGATCTTATAAAAAAGAAGCTAAA
CAAGACCTTCAATCTGCTAAAAAGTTGATTTACGACATTGACAAACTTTC
CCAAAGTACACCATTTTCAAAAATAATGAACTCTCAAAAGTTGCAAAAGT
TGCATACTGAACTTGATGATAAATGTAAAAAAGAAAGGGACTTTGAAGTA
GATTTCCAGCCTAATCAATACGCATTAGATGACAACCTATTCGACTTTAT
TGATTCCCAAATTGGTATGGTTAAGATTTCTATGAATAAAGATGGTGATG
TGACAGAAGTAAAGCCACTGTCAAGCTCTATCAAAAATTCTGAACAACTC
AAAAGATTGGAATCTTCAAACACTGATTACAAAGATTATTTTCATCAAAA
CATTATTCCACAGTTTCTGCAACAACAATCTGTGAAAGGTAATTATGATC
AAAAATCAATTCAATTTTGAATGCTACCCCGCCTTCAACTCCAAAAGAAG
AAAAAGTTGAATCTTCTGGGCAGTCAGAAATTTTCCAATCATTGGAGAAA
AACTGTGAATGTCCTATCTGTCTGGAACGTATGTGTGATCCTCGAACTTT
GACTTGTCATCATTCATTTTGTAAAGAATGCCTTGATGAGACAGTGCAGG
TTGACGACTATGGAATGGCTTCCATAAAGTGCCCCAGTTGTCGTGAAAAC
ACTTATCTCGAGTCTACTGTATCCAAATTGAAATGTGATTTACATTTGAA
AAGTAACATTGATCTTCTGATGACCACGAGTGTCCCTATCGTCACAATGT
AGAGGGGAGTGAAATCTGCTCAGACTGGCAATACAAACCAGGACGTTGTA
ACAAAGTCAAATGTCCAAAAAGACATCCATCAAAAATTGAAGAAGAAGAA
GAAGCTAAAGATGGCAAAGCAACTTTATTCTGTGAAGATTGAGAATATCA
ATGAATCTGTTAAAGAGCCATCGCTGTATGCTGCTTTCAAAAAAAAAGGA
TTTGTCAGTATCCATTCTGTCGTTATTGGTAAGAACAAAACCCATGCATA
TGTCAATTTGTTGAGTGCAAAAGATGCATCACAAGCTGTTCAAAAGTTGC
ACGAGACATACATCAATGGAAACAAAATAAGAGTATCACTTGCTCCACGC
AAGAATTTTGAAAAAGTAACTGACTGCAAGTATGGAGATCTTTGCTCAAA
AAACAAAACAACCTAAGTCCATTGACACTCCAAAATGCTCCGACAAAAGC
TGTGAAAGTGGTGTTCCTGATAGAGCATGCACGGATTGCTCTCAATTGAT
ATGCAGCAAATCATGTTTAATCAAACATTATCAAGTTGGAAAATGCGAAT
GTAAACATCTGGTTGAAATCAGATTTAGTGTTAGAGATGGCAACATTGCA
CCATATTGCCAGCAGCATGAAACATTCGCGAAATATTATTGTACCAATGC
TGATTGTCTTCAGTATAATTGTGTGTTCTGTAAACATCATCTAACACACA
GTAATAAAAGTCTTTCAAGTTTGGGAAAGAAATTTGATGAGGTTTTTGAG
AAATGGAAAACAGATGCTATAGAGCTTCAAACCAATAACCAAAGCACTAA
AGATAAAATTCAATCTGCAATGGATGAAAAAATTCCAATAGTGCGGAAAC
ACATTATTGATTTCAAATATGAAATGATGACAAAAACATGGCTTGCTTTA
AACCAAGTTGAGGATGAGCTTTGCAAAGAATTGGAAAACTCTTGTAGATC
TTATAAAAAAGAAGCTAAACAAGACCTTCAATCTGCTAAAAAGTTGATTT
ACGACATTGACAAACTTTCCCAAAGTACACCATTTTCAAAAATAATGAAC
TCTCAAAAGTTGCAAAAGTTGCATACTGAACTTGATGATAAATGTAAAAA
AGAAAGGGACTTTGAAGTAGATTTCCAGCCTAATCAATACGCATTAGATG
ACAACCTATTCGACTTTATTGATTCCCAAATTGGTATGGTTAAGATTTCT
ATGAATAAAGATGGTGATGTGACAGAAGTAAAGCCACTGTCAAGCTCTAT
CAAAAATTCTGAACAACTCAAAAGATTGGAATCTTCAAACACTGATTACA
AAGATTATTTTCATCAAAACATTATTCCACAGTTTCTGCAACAACAATCT
GTGAAAGGTAATTATGATCAAAAATCAATTCAATTTTGAATGCTACCCCG
CCTTCAACTCCAAAAGAAGAAAAAGTTGAATCTTCTGGGCAGTCAGAAAT
TTTCCAATCATTGGAGAAAAACTGTGAATGTCCTATCTGTCTGGAACGTA
TGTGTGATCCTCGAACTTTGACTTGTCATCATTCATTTTGTAAAGAATGC
CTTGATGAGACAGTGCAGGTTGACGACTATGGAATGGCTTCCATAAAGTG
CCCCAGTTGTCGTGAAAACACTTATCTCGAGTCTACTGTATCCAAATTGA
AATGTGATTTACATTTGAAAAGTAACATTGATCTTCTGATGACCACGAGT
GTCCCTATCGTCACAATGTAGAGGGGAGTGAAATCTGCTCAGACTGGCAA
TACAAACCAGGACGTTGTAACAAAGTCAAATGTCCAAAAAGACATCCATC
AAAAATTGAAGAAGAAGAAGAAGCTAAAGATGGCAAAGCAACTTTATTCT
GTGAAGATTGAGAATATCAATGAATCTGTTAAAGAGCCATCGCTGTATGC
TGCTTTCAAAAAAAAAGGATTTGTCAGTATCCATTCTGTCGTTATTGGTA
AGAACAAAACCCATGCATATGTCAATTTGTTGAGTGCAAAAGATGCATCA
CAAGCTGTTCAAAAGTTGCACGAGACATACATCAATGGAAACAAAATAAG
AGTATCACTTGCTCCACGCAAGAATTTTGAAAAAGTAACTGACTGCAAGT
ATGGAGATCTTTGCTCAAAAAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021082XLOC_021082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035902-exon-sc0001386-1575043694:55381..55724TCONS_00035902-exon-sc0001386-1575043694:55381..55724Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1575043694:54945..55077TCONS_00035902-exon-sc0001386-1575043694:54945..55077Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1575043694:54317..54623TCONS_00035902-exon-sc0001386-1575043694:54317..54623Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1575043694:53142..54186TCONS_00035902-exon-sc0001386-1575043694:53142..54186Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1510915933:55381..55724TCONS_00035902-exon-sc0001386-1510915933:55381..55724Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1510915933:54945..55077TCONS_00035902-exon-sc0001386-1510915933:54945..55077Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1510915933:54317..54623TCONS_00035902-exon-sc0001386-1510915933:54317..54623Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1510915933:53142..54186TCONS_00035902-exon-sc0001386-1510915933:53142..54186Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1491911889:55381..55724TCONS_00035902-exon-sc0001386-1491911889:55381..55724Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1491911889:54945..55077TCONS_00035902-exon-sc0001386-1491911889:54945..55077Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1491911889:54317..54623TCONS_00035902-exon-sc0001386-1491911889:54317..54623Clytia hemisphaericaexon
TCONS_00035902-exon-sc0001386-1491911889:53142..54186TCONS_00035902-exon-sc0001386-1491911889:53142..54186Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035902-proteinTCONS_00035902-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001386supercontigsc0001386:53142..55724 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.4766	23.6836	7.14128	5.91923	22.3566	15.4027	24.1857	25.3574	17.0151	19.293	17.9275	14.7019	18.5848	17.9089	24.0999	32.8824	17.3937	19.176	20.37	23.5082	23.0585	20.6352	31.4125	33.8091	22.9251	29.3996	28.3774	25.51	24.4287	23.8488
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top