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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035894 ID=TCONS_00035894|Name=TCONS_00035894|organism=Clytia hemisphaerica|type=transcript|length=418bp
tgtttacattgcgAGAACCAATGCAAGCTGAAGAATGTGGTCACAGATTT
TGTAAAAGTTGTGTGGAAGAACTTCCAAATGGtgataaTGGAAAACCTTT
GTGTCCAGAAGACAGGAGTGAAATGATTCTATTCCAGGACAAAGGAAAAT
AAAGAGATATTTTGGATTGTCTGGTTTTATGCATTAACTCGGAAGATGGT
TGTCCGTGGACTAAAGAGTTACGATACTTTGAGgaTCATACCAAGGACGA
GTGTCCATTCATGCTTTTAGAATGTACAAATCAAGGGTGCACTGATCAAA
TTCAACGACAAAATCTGTTTCAACATTGTAATGAGTTCTGTATATACAGA
ATGAGCACGTGTGCTTTCTGTTCTTCGGAGTTTACCTTCAATTTAGCACA
GGTATATCTTTATATAAG Run BLAST on NCBI transcript from alignment at sc0001386:4405..6529- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035894 ID=TCONS_00035894|Name=TCONS_00035894|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at sc0001386:4405..6529- (Clytia hemisphaerica)
TGTTTACATTGCGAGAACCAATGCAAGCTGAAGAATGTGGTCACAGATTT
TGTAAAAGTTGTGTGGAAGAACTTCCAAATGGGTACGTGGAAATACTTTT
GTTATTAATTCATGATATGCACCACTGCAATGTCTTCTGTCATTACATGA
CAGGCCTAATAAATGATTGGTTGCAAGTGACGTAAAATCATAGAATACGT
CACTTTCAACCATTCATTACGGACGACCCAATAGATGATTGGTTGCAAGT
GACAATTAGTCATTTAAGGCTTAAAGTTCAAGAAGTTAAGAACATCCGAA
CGCTTTTGGTTCTTTATCCGAACAATTTTGGTTGTTCTCATAAAAAAAAC
GTGTATGCACGATTCAAGACAACTGTTTGTTTAAAATGTCTTGTTTATTC
TTTTTTTTTCAGTGATAATGGAAAACCTTTGTGTCCAGAAGACAGGAGTG
AAATGATTGTATGCAATTTTATGTCTTCATTTTCGGAAATCGAATTGGTA
GACTAAATGGACTACTCTCGGGTACCTAATAGCCGGGGGGGTTGGAATAA
GCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGG
GGGGGGGGGGGCGGCTATTAGGTACCCGAGAGTACTTTCATGGGATTAGT
TTTGCAAGCTCAAAAATCATGAAGTTTTAAGCATTATTTTCGCGAGTCAG
TTATGATTTCATTTGATTTTGCGAATAAGTTGAAATCAGCAGAAAATGGC
CTGAATGTATTTACTTTTTTGCCAAAAGTAAAACATTTGGAGTTGTGAAA
ATGCAGTTGTGAAAATTTAGAAAATTGAAAAATTTTTCAATTAACATATA
ATTTGAAAAGAAATTCTCTAGTTTTGTAAATTCTTTTTCTTTAAGATTCT
TCGTTTTTCTTTTCAAGCTATTCCAGGACAAAGGAAAATAAAGAGATATT
TTGGATTGTCTGGTTTTATGCATTAACTCGGAAGATGGTTGTCCGTGGAC
TAAAGAGTTACGATACTTTGAGGTATTGCTCAGGGTATTTAAATAGCGAA
AATTTTCCATGGCACATAAAATTAGTTACACATTCTCTTATCCTTCCAAA
CAATAAATCTATTCTTTAAGAACAATGCAATATACAGCATATTTTCAGCC
TTAGCTGAGATTACTGAATTATTGAATTATTATGAACTAGAAGTTCTTCG
CAGTCAAAACTTATGTTTTAGATTTTTTTAGCCATCGTCGCTGTAAGCTT
TTATAAAAATATGGTAAACGCAAGTGTATAGATTGTATTGTATAAAAAAA
ATGTGTAATCGCATCCTCGTAGGATTCATAATTGTCCCATTTTGTAATAA
ATAAGTTTTGTTCTTATTTCGTACCTTTTTTTCGTTTTAGGATCATACCA
AGGACGAGTGTCCATTCATGCTTTTAGAATGTACAAATCAAGGGTGCACT
GATCAAATTCAACGACAAAATCTGTTTCAACATTGTAATGAGTTCTGTAT
ATACAGAATGAGCACGTGTGCTTTCTGTTCTTCGGAGTTTACCTTCAATT
TAGCACAGGTATATCTTTATATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035894-exon-sc0001386-1575043694:6448..6529 | TCONS_00035894-exon-sc0001386-1575043694:6448..6529 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1575043694:6072..6117 | TCONS_00035894-exon-sc0001386-1575043694:6072..6117 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1575043694:4958..5062 | TCONS_00035894-exon-sc0001386-1575043694:4958..5062 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1575043694:4405..4589 | TCONS_00035894-exon-sc0001386-1575043694:4405..4589 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1510915933:6448..6529 | TCONS_00035894-exon-sc0001386-1510915933:6448..6529 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1510915933:6072..6117 | TCONS_00035894-exon-sc0001386-1510915933:6072..6117 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1510915933:4958..5062 | TCONS_00035894-exon-sc0001386-1510915933:4958..5062 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1510915933:4405..4589 | TCONS_00035894-exon-sc0001386-1510915933:4405..4589 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1491911889:6448..6529 | TCONS_00035894-exon-sc0001386-1491911889:6448..6529 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1491911889:6072..6117 | TCONS_00035894-exon-sc0001386-1491911889:6072..6117 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1491911889:4958..5062 | TCONS_00035894-exon-sc0001386-1491911889:4958..5062 | Clytia hemisphaerica | exon |
| TCONS_00035894-exon-sc0001386-1491911889:4405..4589 | TCONS_00035894-exon-sc0001386-1491911889:4405..4589 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001386 | supercontig | sc0001386:4405..6529 - |
Blast
BLAST of TCONS_00035894 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.528e-16 Identity = 43/129 (33.33%), Postives = 70/129 (54.26%), Query Frame = 3
Query: 9 LREPMQAEECGHRFCKSCVEELPNGDNGKPLCPEDRSEM---ILFQDKGK*RDILDCLVLCINSEDGCPWTKELRYFEDHTKDECPFMLLECTNQGCTDQIQRQNLFQHCNEFCIYRMSTCAFCSSEFT 386
+REP+Q CGHRFC +C++E + G CPED+ + ++ D +L + CI+SE+GC W+ LR+ + H + C F ++ C N+ C ++ R++L H C R C FC +F+
Sbjct: 25 MREPVQVSTCGHRFCDTCLQEFLS--EGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHL-NTCSFNVIPCPNR-CPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFS 149
The following BLAST results are available for this feature:
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