TCONS_00035882 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035882
Unique NameTCONS_00035882
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035882 ID=TCONS_00035882|Name=TCONS_00035882|organism=Clytia hemisphaerica|type=transcript|length=228bp
GTCAAGGATAATTTGTATATCGCAATTAGCTCTCCATGATTGTAATTGAA
GTTGTTGATGTCTATTCATTCTAGGATCATTTCTTTTAAGAACAATGTTT
GGAACATACTTTTCACCgcctcctttcaattttactttttcaaaggttAA
ATGTGTTTTCTCGCAGCATTCAAAAGGAAATTTAAAACGACATTCCTGTT
TGTCATTCTTAGTTCTTAGACAATAGGC
Run BLAST on NCBI

transcript from alignment at sc0001384:56895..57122

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035882 ID=TCONS_00035882|Name=TCONS_00035882|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0001384:56895..57122 (Clytia hemisphaerica)
GCCTATTGTCTAAGAACTAAGAATGACAAACAGGAATGTCGTTTTAAATT
TCCTTTTGAATGCTGCGAGAAAACACATTTaacctttgaaaaagtaaaat
tgaaaggaggcGGTGAAAAGTATGTTCCAAACATTGTTCTTAAAAGAAAT
GATCCTAGAATGAATAGACATCAACAACTTCAATTACAATCATGGAGAGC
TAATTGCGATATACAAATTATCCTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021071XLOC_021071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035882-exon-sc0001384-1491911889:56895..57122TCONS_00035882-exon-sc0001384-1491911889:56895..57122Clytia hemisphaericaexon
TCONS_00035882-exon-sc0001384-1510915933:56895..57122TCONS_00035882-exon-sc0001384-1510915933:56895..57122Clytia hemisphaericaexon
TCONS_00035882-exon-sc0001384-1575043694:56895..57122TCONS_00035882-exon-sc0001384-1575043694:56895..57122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001384supercontigsc0001384:56895..57122 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.03298	0	4.1677	0.940784	4.41191	6.9727	4.20614	3.93773	2.27845	1.81949	1.15234	5.37714	1.01612	1.22549	1.23848	0.0391638	0	0	0	1.60086	0	2.1037	0	0.504928	5.85426	4.17983	1.64162	2.47711	1.2104	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035882 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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