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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035881 ID=TCONS_00035881|Name=TCONS_00035881|organism=Clytia hemisphaerica|type=transcript|length=1524bp
TTGGCTTTTCCCATTCATCAACAGGTCCTTCAATTGGATTCATAGCTGTC
ATTAAAGAATCTACATAATCACAGATTTGCCTTTCAGCATTGTTTCCCTC
TATTACAGCAAGATTTAAAAGAGTATTATTTTCAAGGTCAATCTCTGTTT
GATTTGATAGTTTGTTGAGCCAAAAAACCTTGCAAAGCCTTCTCAGTCAA
TTCACATATTCCCGGATCATCTTTTAATTTTGCTAAACCGTGACAATGTA
TAGAACCACGCATAACAGCAAATTCAAACCTATACCAATGCCATTCTGCA
CTTAAAGATTCATATAACCAAtgttttacaaaactttttactcgCTCAGT
GAAGAACCAATCTACTATATGAGGATTATCAACAATGTTTTGTCTAAAAT
CAGCAGATTCAGATTCgtcatttgaagaaaataaatcatgaatGTCTGGC
CAGTGAAAATCAGCCATACTCAATGTCCAAAATATAGTTGGCGTGCCCAT
TTGTGTTATTGTGGCTTTTAATTTTTCCTTGACATCGCACCAATAGGCAT
TAGTACCTGTTACATTCTTTGAGTATCTTTGTAGTTTTTTCATTACTATG
TAGTGATCATTATCCCTAACAAGATCTTGCAAATCTTCAATGCTCAAATT
AGCTTCACCTGGGTTttgcttgataaaaaaatttccttgacTAATCAATC
TTTTTCTATACAGCATATTGAATCCCCAAAAGGAAAATCTTGGATGAGAT
GCAAATCTATAAAACCATTTTCCTTTGTCATCAATTTCGGCAGATTTGat
taaatgtttcaatttttcagcaaaactCTCTGTTTCACTTTTTGCTATTT
CCCTTATGATTGCAGGATTAGTTGGGTCACCTTTTGTGTCTGGAAACAAT
GTTGGAAATGCAAGACTTGCTAAGTAGGGTGTATTGAATTCACTAAGTGG
AGTACTTCCTATATCAACTTCAGTTTTTGtattcaaaatttcactttttg
ttaAGTCAGCTTCCTTTGCTTTCTTTAGTTTAGAGGGTaagaaacttttc
atttcagTGTTTTCGTCAAAAACACGTTCATTGTTATCATCATTAACTGG
ACCAAAATCTGGTAGTTCTTCGCTTTCACTGACATCTTCATTTTCCtcgt
cactttcattttcttcacCACACTCAATATCATTTTTCTCATTCATTTTT
ACGTGCAAGTCTGGTAAATCAATGAATCCGTTTTCAGGCAGCTTTAGTAG
TCTTTCCATATCTATATTGATTTCACTATATAGAAAATTATTAGGTTCAC
CTTGTTCATTTTTTCCTGTCAGCCATAATAATGCCTGTAAAACCTTTTCA
CGTCTAACGACAAGTTCTTTTGAGGTATTATTTTTcccatttattttaaa
aatcattataGGAATGTCACTAGGCTCTCTTGGCAGAACATCTGCAATTT
TTTGTACATTGTGAGGCAAATTCAAAACGTGACCTTTATAAGCTCTCTGA
CCTCCTCTTGGTCGGGTGTACACT Run BLAST on NCBI protein sequence of TCONS_00035881-protein >TCONS_00035881-protein ID=TCONS_00035881-protein|Name=TCONS_00035881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
VYTRPRGGQRAYKGHVLNLPHNVQKIADVLPREPSDIPIMIFKINGKNNT
SKELVVRREKVLQALLWLTGKNEQGEPNNFLYSEINIDMERLLKLPENGF
IDLPDLHVKMNEKNDIECGEENESDEENEDVSESEELPDFGPVNDDNNER
VFDENTEMKSFLPSKLKKAKEADLTKSEILNTKTEVDIGSTPLSEFNTPY
LASLAFPTLFPDTKGDPTNPAIIREIAKSETESFAEKLKHLIKSAEIDDK
GKWFYRFASHPRFSFWGFNMLYRKRLISQGNFFIKQNPGEANLSIEDLQD
LVRDNDHYIVMKKLQRYSKNVTGTNAYWCDVKEKLKATITQMGTPTIFWT
LSMADFHWPDIHDLFSSNDESESADFRQNIVDNPHIVDWFFTERVKSFVK
HWLYESLSAEWHWYRFEFAVMRGSIHCHGLAKLKDDPGICELTEKALQGF
LAQQTIKSNRD Run BLAST on NCBI transcript from alignment at sc0001384:55148..56671 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035881 ID=TCONS_00035881|Name=TCONS_00035881|organism=Clytia hemisphaerica|type=transcript|length=1524bp|location=Sequence derived from alignment at sc0001384:55148..56671 (Clytia hemisphaerica)
AGTGTACACCCGACCAAGAGGAGGTCAGAGAGCTTATAAAGGTCACGTTT
TGAATTTGCCTCACAATGTACAAAAAATTGCAGATGTTCTGCCAAGAGAG
CCTAGTGACATTCCtataatgatttttaaaataaatgggAAAAATAATAC
CTCAAAAGAACTTGTCGTTAGACGTGAAAAGGTTTTACAGGCATTATTAT
GGCTGACAGGAAAAAATGAACAAGGTGAACCTAATAATTTTCTATATAGT
GAAATCAATATAGATATGGAAAGACTACTAAAGCTGCCTGAAAACGGATT
CATTGATTTACCAGACTTGCACGTAAAAATGAATGAGAAAAATGATATTG
AGTGTGgtgaagaaaatgaaagtgacgaGGAAAATGAAGATGTCAGTGAA
AGCGAAGAACTACCAGATTTTGGTCCAGTTAATGATGATAACAATGAACG
TGTTTTTGACGAAAACActgaaatgaaaagtttcttACCCTCTAAACTAA
AGAAAGCAAAGGAAGCTGACTtaacaaaaagtgaaattttgaataCAAAA
ACTGAAGTTGATATAGGAAGTACTCCACTTAGTGAATTCAATACACCCTA
CTTAGCAAGTCTTGCATTTCCAACATTGTTTCCAGACACAAAAGGTGACC
CAACTAATCCTGCAATCATAAGGGAAATAGCAAAAAGTGAAACAGAGagt
tttgctgaaaaattgaaacatttaatCAAATCTGCCGAAATTGATGACAA
AGGAAAATGGTTTTATAGATTTGCATCTCATCCAAGATTTTCCTTTTGGG
GATTCAATATGCTGTATAGAAAAAGATTGATTAgtcaaggaaattttttt
atcaagcaaAACCCAGGTGAAGCTAATTTGAGCATTGAAGATTTGCAAGA
TCTTGTTAGGGATAATGATCACTACATAGTAATGAAAAAACTACAAAGAT
ACTCAAAGAATGTAACAGGTACTAATGCCTATTGGTGCGATGTCAAGGAA
AAATTAAAAGCCACAATAACACAAATGGGCACGCCAACTATATTTTGGAC
ATTGAGTATGGCTGATTTTCACTGGCCAGACattcatgatttattttctt
caaatgacGAATCTGAATCTGCTGATTTTAGACAAAACATTGTTGATAAT
CCTCATATAGTAGATTGGTTCTTCACTGAGcgagtaaaaagttttgtaaa
acaTTGGTTATATGAATCTTTAAGTGCAGAATGGCATTGGTATAGGTTTG
AATTTGCTGTTATGCGTGGTTCTATACATTGTCACGGTTTAGCAAAATTA
AAAGATGATCCGGGAATATGTGAATTGACTGAGAAGGCTTTGCAAGGTTT
TTTGGCTCAACAAACTATCAAATCAAACAGAGATTGACCTTGAAAATAAT
ACTCTTTTAAATCTTGCTGTAATAGAGGGAAACAATGCTGAAAGGCAAAT
CTGTGATTATGTAGATTCTTTAATGACAGCTATGAATCCAATTGAAGGAC
CTGTTGATGAATGGGAAAAGCCAA Coding sequence (CDS) from alignment at sc0001384:55148..56671 >TCONS_00035881 ID=TCONS_00035881|Name=TCONS_00035881|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0001384:55148..56671 (Clytia hemisphaerica)
GTGTACACCCGACCAAGAGGAGGTCAGAGAGCTTATAAAGGTCACGTTTT
GAATTTGCCTCACAATGTACAAAAAATTGCAGATGTTCTGCCAAGAGAGC
CTAGTGACATTCCtataatgatttttaaaataaatgggAAAAATAATACC
TCAAAAGAACTTGTCGTTAGACGTGAAAAGGTTTTACAGGCATTATTATG
GCTGACAGGAAAAAATGAACAAGGTGAACCTAATAATTTTCTATATAGTG
AAATCAATATAGATATGGAAAGACTACTAAAGCTGCCTGAAAACGGATTC
ATTGATTTACCAGACTTGCACGTAAAAATGAATGAGAAAAATGATATTGA
GTGTGgtgaagaaaatgaaagtgacgaGGAAAATGAAGATGTCAGTGAAA
GCGAAGAACTACCAGATTTTGGTCCAGTTAATGATGATAACAATGAACGT
GTTTTTGACGAAAACActgaaatgaaaagtttcttACCCTCTAAACTAAA
GAAAGCAAAGGAAGCTGACTtaacaaaaagtgaaattttgaataCAAAAA
CTGAAGTTGATATAGGAAGTACTCCACTTAGTGAATTCAATACACCCTAC
TTAGCAAGTCTTGCATTTCCAACATTGTTTCCAGACACAAAAGGTGACCC
AACTAATCCTGCAATCATAAGGGAAATAGCAAAAAGTGAAACAGAGagtt
ttgctgaaaaattgaaacatttaatCAAATCTGCCGAAATTGATGACAAA
GGAAAATGGTTTTATAGATTTGCATCTCATCCAAGATTTTCCTTTTGGGG
ATTCAATATGCTGTATAGAAAAAGATTGATTAgtcaaggaaattttttta
tcaagcaaAACCCAGGTGAAGCTAATTTGAGCATTGAAGATTTGCAAGAT
CTTGTTAGGGATAATGATCACTACATAGTAATGAAAAAACTACAAAGATA
CTCAAAGAATGTAACAGGTACTAATGCCTATTGGTGCGATGTCAAGGAAA
AATTAAAAGCCACAATAACACAAATGGGCACGCCAACTATATTTTGGACA
TTGAGTATGGCTGATTTTCACTGGCCAGACattcatgatttattttcttc
aaatgacGAATCTGAATCTGCTGATTTTAGACAAAACATTGTTGATAATC
CTCATATAGTAGATTGGTTCTTCACTGAGcgagtaaaaagttttgtaaaa
caTTGGTTATATGAATCTTTAAGTGCAGAATGGCATTGGTATAGGTTTGA
ATTTGCTGTTATGCGTGGTTCTATACATTGTCACGGTTTAGCAAAATTAA
AAGATGATCCGGGAATATGTGAATTGACTGAGAAGGCTTTGCAAGGTTTT
TTGGCTCAACAAACTATCAAATCAAACAGAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035881-exon-sc0001384-1491911889:55148..56671 | TCONS_00035881-exon-sc0001384-1491911889:55148..56671 | Clytia hemisphaerica | exon |
| TCONS_00035881-exon-sc0001384-1510915933:55148..56671 | TCONS_00035881-exon-sc0001384-1510915933:55148..56671 | Clytia hemisphaerica | exon |
| TCONS_00035881-exon-sc0001384-1575043694:55148..56671 | TCONS_00035881-exon-sc0001384-1575043694:55148..56671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001384 | supercontig | sc0001384:55148..56671 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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