TCONS_00035876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035876
Unique NameTCONS_00035876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035876 ID=TCONS_00035876|Name=TCONS_00035876|organism=Clytia hemisphaerica|type=transcript|length=592bp
NTGGGCGTTGTTTTCATTCTCTCACGCACATACACCACTGTCTCAGTgcc
gccccggtggagctttttccttcagtgtggatgaaaatttctatctaatC
GTAGTGGCCAGACGATTTTTGGCTAAGTTTTCTAGTGGGGCGGGGGGCTC
CACCGGATCTCTGACACGAGGTTATTCTCCAGAGGGTTTCCATCATATTC
TTGCCCTCGCCAATGAATGTGTATCATTATGATATTACTACAACGTTTGA
AAATGTGGAAATACACGTCTCACCTGGATATGATCGCAATTGTGTTccca
taaaaatgaaaactgaaataaaaaagaaaaagaagaaacggcGAGAGAAG
AATTGTTGTAATTCACCCTATCTTGACCACTGGAGAACTAAAAATAAGTA
TGAAGTGGCAGGATCGGGATTCTGAAACACCGTTATCTCACAATGCCCGT
ATTCTAAGTTTCGTATGTTCCGCATTCGAAAATCGAAAGTATGGCCGCGC
GGATAAACTCCTTCACTACAGCCTCACGCCAGCATAAGAAGGAACGATTC
TTgttttccaaatcaaaatacaaGGACAATAAAGAAGGATTT
Run BLAST on NCBI

transcript from alignment at sc0001381:8440..9031

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035876 ID=TCONS_00035876|Name=TCONS_00035876|organism=Clytia hemisphaerica|type=transcript|length=592bp|location=Sequence derived from alignment at sc0001381:8440..9031 (Clytia hemisphaerica)
AAATCCTTCTTTATTGTCCttgtattttgatttggaaaacAAGAATCGTT
CCTTCTTATGCTGGCGTGAGGCTGTAGTGAAGGAGTTTATCCGCGCGGCC
ATACTTTCGATTTTCGAATGCGGAACATACGAAACTTAGAATACGGGCAT
TGTGAGATAACGGTGTTTCAGAATCCCGATCCTGCCACTTCATACTTATT
TTTAGTTCTCCAGTGGTCAAGATAGGGTGAATTACAACAATTCTTCTCTC
gccgtttcttctttttcttttttatttcagttttcatttttatgggAACA
CAATTGCGATCATATCCAGGTGAGACGTGTATTTCCACATTTTCAAACGT
TGTAGTAATATCATAATGATACACATTCATTGGCGAGGGCAAGAATATGA
TGGAAACCCTCTGGAGAATAACCTCGTGTCAGAGATCCGGTGGAGCCCCC
CGCCCCACTAGAAAACTTAGCCAAAAATCGTCTGGCCACTACGattagat
agaaattttcatccacactgaaggaaaaagctccaccggggcggcACTGA
GACAGTGGTGTATGTGCGTGAGAGAATGAAAACAACGCCCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021065XLOC_021065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035876-exon-sc0001381-1491911889:8440..9031TCONS_00035876-exon-sc0001381-1491911889:8440..9031Clytia hemisphaericaexon
TCONS_00035876-exon-sc0001381-1510915933:8440..9031TCONS_00035876-exon-sc0001381-1510915933:8440..9031Clytia hemisphaericaexon
TCONS_00035876-exon-sc0001381-1575043694:8440..9031TCONS_00035876-exon-sc0001381-1575043694:8440..9031Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001381supercontigsc0001381:8440..9031 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.125237	0.91023	0.742378	0.533989	0.549337	0.0853436	0.333358	0.235798	0.341657	0.214293	1.21731	0	0	0.110831	0.391489	0.0141102	0.160661	0.336924	0.192917	0	0.157242	1.11905	1.64778	0	0	0	0.205602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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