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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035858 ID=TCONS_00035858|Name=TCONS_00035858|organism=Clytia hemisphaerica|type=transcript|length=1093bp
CTTTGTTAGCTTCGATCTTCTTCTCCTCCTTTTCCTTCTTCTTCGCCTCT
TTAGCGTTCTTTTTTGCCTCTTTTGCATTCTCTTGATCAATGATTACTTG
GAACTTTTCATCGCTAGTAACTAACTCACTCATCGGGTTGGCTCGCTTAC
GTTTTACGGTTTCGGGAGCTTTGGAAGACTTCGGCGTGTTGTTTTGCATA
GCCTCTATCCCCTTTAACGCAACTTCTTTGAACGATTTCTTGTTGGAGTC
GGATGTGTTCGTTTGAGACGATGGAGGTGGGGTGTCGATATGCTCCATGG
CTGTTGGGTCTTCGTCAGGAACAAAGAAcgtaatgatttttcttttgacg
CCATTACGATTGAATTCTGCTGGTGCCGTTGGTGTGTTTGGCGTTGATTC
GTTTTCTTCTTGTTCTTTCATTTCGTCGTCTTTCTTTGCGACATTTAGTA
GTGCATCCACTTCTTCCGCTGATAATTCAGGTTTACCTTCCGCAACCCAC
AGATCGTATCGAGATTTCAGGTGAGGGTGAAAGCGATTGGTTGGGTACTG
CTCTCGGCTAGGAGGGAAGATACCACATCCTCGAAAGCCGTTTGTGATAT
TCGACTTTGAAAGTGCTTTGCTCGTACAATCCAAATCACAAAGGGCATTT
GAGAACTCGGCTTTGGATAAGCGATTTCTTGTGGTTTTAAGTCGACTGAA
CAGCATGTCGGGCCAGTGGTTCTTCAGGGACTTGAAAACTGACACGTCAA
GTGGTTGAAGCAAGTCGGTTGTATGGGCTGGTAGTTTGATAATCGAAACA
TTTTTGTTACGCGCCAACTCGATCGTTCCGTACCAGATGTGAGATAGGTG
GCCATCATATATTAGCAAACGTGGCTCCAAATTACCATCTTCATCATAAG
TGCGGGTTTTCGATTCCCATTCCTCAAACCAGCGATAGAACGTACTAGAG
TCCATCCAGCCTGATTTATTGGCGTAGAGCCAAGGATAATTTTCATGATC
CTTGGGAAGATTCGGTCACCAAGTAGTTTGAGCGTGGACACCTTCAAACA
CGATCATCGGGGGCAGTTTTTGTCCAGTCGCTGAAACTGCAGC Run BLAST on NCBI protein sequence of TCONS_00035858-protein >TCONS_00035858-protein ID=TCONS_00035858-protein|Name=TCONS_00035858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MDSSTFYRWFEEWESKTRTYDEDGNLEPRLLIYDGHLSHIWYGTIELARN
KNVSIIKLPAHTTDLLQPLDVSVFKSLKNHWPDMLFSRLKTTRNRLSKAE
FSNALCDLDCTSKALSKSNITNGFRGCGIFPPSREQYPTNRFHPHLKSRY
DLWVAEGKPELSAEEVDALLNVAKKDDEMKEQEENESTPNTPTAPAEFNR
NGVKRKIITFFVPDEDPTAMEHIDTPPPSSQTNTSDSNKKSFKEVALKGI
EAMQNNTPKSSKAPETVKRKRANPMSELVTSDEKFQVIIDQENAKEAKKN
AKEAKKKEKEEKKIEANK Run BLAST on NCBI transcript from alignment at sc0001377:52888..53980 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035858 ID=TCONS_00035858|Name=TCONS_00035858|organism=Clytia hemisphaerica|type=transcript|length=1093bp|location=Sequence derived from alignment at sc0001377:52888..53980 (Clytia hemisphaerica)
GCTGCAGTTTCAGCGACTGGACAAAAACTGCCCCCGATGATCGTGTTTGA
AGGTGTCCACGCTCAAACTACTTGGTGACCGAATCTTCCCAAGGATCATG
AAAATTATCCTTGGCTCTACGCCAATAAATCAGGCTGGATGGACTCTAGT
ACGTTCTATCGCTGGTTTGAGGAATGGGAATCGAAAACCCGCACTTATGA
TGAAGATGGTAATTTGGAGCCACGTTTGCTAATATATGATGGCCACCTAT
CTCACATCTGGTACGGAACGATCGAGTTGGCGCGTAACAAAAATGTTTCG
ATTATCAAACTACCAGCCCATACAACCGACTTGCTTCAACCACTTGACGT
GTCAGTTTTCAAGTCCCTGAAGAACCACTGGCCCGACATGCTGTTCAGTC
GACTTAAAACCACAAGAAATCGCTTATCCAAAGCCGAGTTCTCAAATGCC
CTTTGTGATTTGGATTGTACGAGCAAAGCACTTTCAAAGTCGAATATCAC
AAACGGCTTTCGAGGATGTGGTATCTTCCCTCCTAGCCGAGAGCAGTACC
CAACCAATCGCTTTCACCCTCACCTGAAATCTCGATACGATCTGTGGGTT
GCGGAAGGTAAACCTGAATTATCAGCGGAAGAAGTGGATGCACTACTAAA
TGTCGCAAAGAAAGACGACGAAATGAAAGAACAAGAAGAAAACGAATCAA
CGCCAAACACACCAACGGCACCAGCAGAATTCAATCGTAATGGcgtcaaa
agaaaaatcattacgTTCTTTGTTCCTGACGAAGACCCAACAGCCATGGA
GCATATCGACACCCCACCTCCATCGTCTCAAACGAACACATCCGACTCCA
ACAAGAAATCGTTCAAAGAAGTTGCGTTAAAGGGGATAGAGGCTATGCAA
AACAACACGCCGAAGTCTTCCAAAGCTCCCGAAACCGTAAAACGTAAGCG
AGCCAACCCGATGAGTGAGTTAGTTACTAGCGATGAAAAGTTCCAAGTAA
TCATTGATCAAGAGAATGCAAAAGAGGCAAAAAAGAACGCTAAAGAGGCG
AAGAAGAAGGAAAAGGAGGAGAAGAAGATCGAAGCTAACAAAG Coding sequence (CDS) from alignment at sc0001377:52888..53980 >TCONS_00035858 ID=TCONS_00035858|Name=TCONS_00035858|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0001377:52888..53980 (Clytia hemisphaerica)
ATGGACTCTAGTACGTTCTATCGCTGGTTTGAGGAATGGGAATCGAAAAC
CCGCACTTATGATGAAGATGGTAATTTGGAGCCACGTTTGCTAATATATG
ATGGCCACCTATCTCACATCTGGTACGGAACGATCGAGTTGGCGCGTAAC
AAAAATGTTTCGATTATCAAACTACCAGCCCATACAACCGACTTGCTTCA
ACCACTTGACGTGTCAGTTTTCAAGTCCCTGAAGAACCACTGGCCCGACA
TGCTGTTCAGTCGACTTAAAACCACAAGAAATCGCTTATCCAAAGCCGAG
TTCTCAAATGCCCTTTGTGATTTGGATTGTACGAGCAAAGCACTTTCAAA
GTCGAATATCACAAACGGCTTTCGAGGATGTGGTATCTTCCCTCCTAGCC
GAGAGCAGTACCCAACCAATCGCTTTCACCCTCACCTGAAATCTCGATAC
GATCTGTGGGTTGCGGAAGGTAAACCTGAATTATCAGCGGAAGAAGTGGA
TGCACTACTAAATGTCGCAAAGAAAGACGACGAAATGAAAGAACAAGAAG
AAAACGAATCAACGCCAAACACACCAACGGCACCAGCAGAATTCAATCGT
AATGGcgtcaaaagaaaaatcattacgTTCTTTGTTCCTGACGAAGACCC
AACAGCCATGGAGCATATCGACACCCCACCTCCATCGTCTCAAACGAACA
CATCCGACTCCAACAAGAAATCGTTCAAAGAAGTTGCGTTAAAGGGGATA
GAGGCTATGCAAAACAACACGCCGAAGTCTTCCAAAGCTCCCGAAACCGT
AAAACGTAAGCGAGCCAACCCGATGAGTGAGTTAGTTACTAGCGATGAAA
AGTTCCAAGTAATCATTGATCAAGAGAATGCAAAAGAGGCAAAAAAGAAC
GCTAAAGAGGCGAAGAAGAAGGAAAAGGAGGAGAAGAAGATCGAAGCTAA
CAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035858-exon-sc0001377-1491911889:52888..53980 | TCONS_00035858-exon-sc0001377-1491911889:52888..53980 | Clytia hemisphaerica | exon |
| TCONS_00035858-exon-sc0001377-1510915933:52888..53980 | TCONS_00035858-exon-sc0001377-1510915933:52888..53980 | Clytia hemisphaerica | exon |
| TCONS_00035858-exon-sc0001377-1575043694:52888..53980 | TCONS_00035858-exon-sc0001377-1575043694:52888..53980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001377 | supercontig | sc0001377:52888..53980 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004875 | DDE_SF_endonuclease_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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