TCONS_00035855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035855
Unique NameTCONS_00035855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035855 ID=TCONS_00035855|Name=TCONS_00035855|organism=Clytia hemisphaerica|type=transcript|length=871bp
tctagttttcattaaaaaaaaaataataatttcctAGAATCAAGATAAGG
TAAACAATACATTACTATGGCAACAACAGATAATATGGTGAACATTCCTT
TATCTTCTGATGAAGATACTGGTAATAGAGGGTCAGGAGCAGGAAGTGTG
GAAAGAAGAACACATAATATACAACAAAAACAACCTCCATTAAATAAAGA
ACATAACATTCAGATAGACCAAACAGATGATTTCTCAGACGCGATGGATG
GAGATGAGAAAGAGGAGAAATCCCGTTTGATACAACAAGTTTTCTCACTA
CAAAATACACTTGATGACCTTTCACAGCGGGTTGATGCTGTCAAAGATGA
AAATACCAAATTGAAATCTGAAAACCAAATTTTAGGACAATATATCGAGA
ATTTAATGGCAGCATCTAGTGTGTTCCAGggcaacaaaatgaaaaataaG
AATGATAAATCGAAAAAAGATGGAAAGAAATGAACTAGAATCCTCCTAGA
TTGGCTAAAGGGAGCTAACAGTTATTTTTTGGTTGtacagaaatttattt
ttttaagttcaaattgtatttatttttttcaaacgaaATTGTAAAATATG
tgagttttttgttttaattttaaagaTTGTTCTAAACATCGAGATGGAGT
TTAATTAATCGCTCTTcagatttttcacatttttataaaattcaGATTAC
AGTGTGTCTGACAAAAATAGAAGACAATTTATAAACTCATTACCATAAAG
AACAATATCCTTTGTTTGTTCAAAGGTAatacaatagaccttatcggagt
tttttatttttctaaaaaagcgatgcattgtgggattgtttcgagtgtat
tacaatagaattccctcgagg
Run BLAST on NCBI

transcript from alignment at sc0001377:11186..17871-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035855 ID=TCONS_00035855|Name=TCONS_00035855|organism=Clytia hemisphaerica|type=transcript|length=6686bp|location=Sequence derived from alignment at sc0001377:11186..17871- (Clytia hemisphaerica)
TCTAGTTTTCATTAAAAAAAAAATAATAATTTCCTAGAATCAAGATAAGG
TAAACAATACATTACTATGGCAACAACAGATAATATGGTGAACATTCCTT
TATCTTCTGATGAAGATACTGGTAATAGAGGGTCAGGAGCAGGAAGTGTG
GAAAGAAGAACACATAATATACAACAAAAACAACCTCCATTAAATAAAGA
ACATAACATTCAGATAGACCAANAATAATATACAACAAGAACAACCTCCA
TTAAATAAAGAACATAACATTCAGATAGACCAAACAGATGATTTCTCAGG
TAATTGTTTTATACCTTTGTTTTGTTTGTATTACTGCAATTCTATCTTAA
CATTCAAGATTACATTCTCCTCAAAGATGGTGGAGGACGTTATTCTTTGC
CTTGAACCCAGTCTCTCAGTAGACCAACCATATGCAAAGTGCCAGTTTGA
GCATTTTTTATTTGGCTAAAGCTCTTTCCCTAAGGCTGATTTGATAAATT
TAAGAAGCTAGTTAATGAAAACTTTGATTCTGTTGATTTTTGTGATTTTG
TGATTTGTAAACTTTCGATCAATTCCACCTTTTGGGAGCCCAGGAACTAA
TGGAACGTTTTACTTGGATTTTCAGCCAAAGTGAAAACTATTTCACTCTT
AATAGTACAACTTTTACCCCTTAAAGCGCAAGGGGCAGGTTTAGAGTTTA
TAAGGAATTAATGACGTCAAAATGTCGGCAAATGATCTCAGGGATTTAAC
TGCAACTTCTCCTCTTACCTTAATCTTAGGAGGGCTCGCACTTTTAAAGA
GTTGATAGGTTTTATTTCACTAGTCGATCTTTAAGTGTATTTTTTACATT
TAGACGCGATGGATGGAGATGAGAAAGAGGAGAAATCCCGTTTGATACAA
CAAGTTTTCTCACTACAAAATACACTTGATGGTTGGTATTTTAATTTTAG
TCATTTTTTCCAATAAGACTGTTGCTCCTGACGGTGAAGCTTTCTCAAAA
TTTGGAAAGCGTATTTTTTCCAATCTNAACTGTTGCTCCTGACCGTGAAG
CTTTCTCAAAATTTGGAAAGCGTAATTTTTCCAATCTAGTTTACTTTAAT
TTATAATAAAGTGTTGAAGGATCGTGTTCAAAAATAAAGGCCTGTTTTGT
GACGTTTTCAAAGTTGGCTGACAATTATGTTAATAAAATGAGTATTTTTG
GTGGCTAACCATTTATTTTTTCACCAAGGATAATAATGATTAACCTTTCC
AATTGTTTTGGAGCGAAATTAAGTGGCTTACTAGGTTACAAGATATTTCA
AGATAAGCTATGAGTCGTTTATGTGGCTGACAANNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNTCCTGTGTCCTGTCTCCTGCGTCCTGTCTCC
TGCGTTTCGAACCAACTGCTCTTTGTCTGGTTTTCGGTTGGTTGTTAAAG
TTGGATAAAAAAGTGAACCCTGTATCTTTCTAGCCATAATGAAGGATATT
TCAAACAAACAACTGACAGAATGCATGATTGAAATTTGATTGAAAATATT
TTAGGATTTAAAAAAATTTCAATGCAAAGATTGAAAGATAATTTTGGAAA
TTACTAAATAAAATCTTTTGATTTGATCTAGTTTTCATTAAAAAAAAAAT
AATAATTTCCTAGAATCAAGATAAGGTAAACAATACATTACTATGGCAAC
AACAGATAATATGGTGAACATTCCTTTATCTTCTGATGAAGATACTGGTA
ATAGAGGGTCAGGAGCAGGAAGTGTGGAAAGAAGAACAAATAATATACAA
CAAGAACAACCTCCATTAAATAAAGAACATAACATTCAGATAGACCAAAC
AGATGATTTCTCAGGTAATTGTTTTATACCTTTGTTTTGTTTGTATTACT
GCAATTCTATCTTAACATTCAAGATTACATTCTCCTCAAAGATGGTGGAG
GACGTTATTCTTTGCCTTGAACCCAGTCTCTCAGTAGACCAACCATATGC
AAAGTGCCAGTTTGAGCATTTTTTATTTGGCTAAAGCTCTTTCCCTAAGG
CTGATTTGATAAATTTAAGAAGCTAGTTAATGAAAACTTTGATTCTGTTG
ATTTTTGTGATTTTGTGATTTGTAAACTTTCGATCAATTCCACCTTTTGG
GAGCCCAGGAACTAATGGAACGTTTTACTTGGATTTTCAGCCAAAGTGAA
AACTATTTGACTCTTATTAATAGTACAACTATTATCCCTTAAAGCGCAAG
GGGCAGGTTTAGAGTTTATAAGGAATTAATGACGTCAAAATGTCGGCAAA
TGATCTCAGGGATTTAACTGCAACTTCTCCTCTTAACTAAATCTTAGGAG
GGCTCGCACTTTTAAAGAGTTGATAGGTTTTATTTCACTAGTCGATCTTT
AAGTGTATTTTTTACATTTAGACGCGATGGATGGAGATGAGAAAGAGGAG
AAATCCCGTTTGATACAACAAGTTTTCTCACTACAAAATACACTTGATGG
TTGGTATTTTAATTTTAGTCATTTTTTCCAATAAGACTGTTGCTCCTGAC
GGTGAAGCTTTCTCAAAATTTGGAAAGCGTATTTTTTCCAATCTAGTTAA
GTTTACTTTAATTTATAAAGTGTTGAAGGTGTTCTCTAAATGTTGCAAAT
TATTCATTCTGAGATATGTTAGTTACTTCACATTGATACCATATCTATTC
TTATTCACTATCTCTTTCTAGACCTTTCACAGCGGGTTGATGCTGTCAAA
GATGAAAATACCAAATTGAAATCTGAAAACCAAGTATGATTTTTTATTCA
CAAAAAGACACAGTAGTATAATCGGTATCATCCATGGCTGGCTGCCGTCC
GGGATGTCAGGATTGAATTCTAACTCGCTGCTGTGATTTACTTTGGAAAT
GAATAATGATTTTACTTTCGCCTTGGCTAACTCATCCCATGTTAGTTAGG
GGAATTGCTCAGTCAGTTAAAATCAAAAAGCCTGTCGGTTATTGTCCTAT
GTTTCTATTCACATACGGCAGACCGCGGATGTATAAACAAGAATTTGATT
CATTATTTTAATCACGTGTTTTTGATTTCGTCTACAGATTTTAGGACAAT
ATATCGAGAATTTAATGGCAGCATCTAGTGTGTTCCAGGGCAACAAAATG
AAAAATAAGTAAGTTTTTGTGATCATAAATTCTTCCCATTGAAGAGGCTA
GTTTTACTTTGTCAGTGGCAAGGAGAAGTTTATGTTTTTTAGCACACTCG
TGTGAGATTGTAGCTTCAATGTAATGGAAATTATCGGTTTATCGGTACAA
TATACAATATCTCCGTATTTCGAACTCGAATCTCTCCGTATTTCGAACTC
GAACATGTTTCCCGTGCTGTTTGATTTCCCTTTGTTGTTGTTGGACCTAC
CCCGGTGGGGTGGAGGTCCTATAAATTAACCCGTGTTCGTTCGTTCGTTA
GTGTGTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGA
TTTTTGGCACAAAGGTGCATGACCACAAACCCTCCNNNNNNNNNNNNNNN
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NNNNNNNAAAATGTCACGTTAGAGTGCGACGGTTTGAGTTTTCTGGAAAC
CTTATTTATTAAGCTGTGCATTTTTCTGTCTGATAGTAGATAGTGGTTTT
TATAAAGAAAAGCGCTTAATAGCTTTTTTATTTCTTTTTCAAAAATCTTT
TTCAATAGTGTTGATAGTTTTTCTCAATAGATATGGTTTCATTTTCTTTA
TTTTTTGTATTTTGACCAGTTATGTCTTATGTGTTTCATTGTTTCAATGT
TCACTGATTAGTTTGATAAACCAGGTAGGTCCATAAAAGTATCGCTTGTT
TTTTTTCAAACATTGGAATAAACTATCACTTAAGTGAGCTGATATTAAAA
CATTTTTTCCATAGGAATGATAAATCGAAAAAAGATGGAAAGAAATGAAC
TAGAATCCTCCTAGATTGGCTAAAGGGAGCTAACAGTTATTTTTTGGTTG
TACAGAAATTTATTTTTTTAAGTTCAAATTGTATTTATTTTTTTCAAACG
AAATTGTAAAATATGTGAGTTTTTTGTTTTAATTTTAAAGATTGTTCTAA
ACATCGAGATGGAGTTTAATTAATCGCTCTTCAGATTTTTCACATTTTTA
TAAAATTCAGATTACAGTGTGTCTGACAAAAATAGAAGACAATTTATAAA
CTCATTACCATAAAGAACAATATCCTTTGTTTGTTCAAAGGTAATACAAT
AGACCTTATCGGAGTTTTTTATTTTTCTAAAAAAGCGATGCATTGTGGGA
TTGTTTCGAGTGTATTACAATAGAATTCCCTCGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021053XLOC_021053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035855-exon-sc0001377-1575043694:17665..17871TCONS_00035855-exon-sc0001377-1575043694:17665..17871Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1575043694:17573..17603TCONS_00035855-exon-sc0001377-1575043694:17573..17603Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1575043694:16941..17018TCONS_00035855-exon-sc0001377-1575043694:16941..17018Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1575043694:14189..14250TCONS_00035855-exon-sc0001377-1575043694:14189..14250Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1575043694:13814..13884TCONS_00035855-exon-sc0001377-1575043694:13814..13884Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1575043694:11186..11607TCONS_00035855-exon-sc0001377-1575043694:11186..11607Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1510915933:17665..17871TCONS_00035855-exon-sc0001377-1510915933:17665..17871Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1510915933:17573..17603TCONS_00035855-exon-sc0001377-1510915933:17573..17603Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1510915933:16941..17018TCONS_00035855-exon-sc0001377-1510915933:16941..17018Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1510915933:14189..14250TCONS_00035855-exon-sc0001377-1510915933:14189..14250Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1510915933:13814..13884TCONS_00035855-exon-sc0001377-1510915933:13814..13884Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1510915933:11186..11607TCONS_00035855-exon-sc0001377-1510915933:11186..11607Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1491911889:17665..17871TCONS_00035855-exon-sc0001377-1491911889:17665..17871Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1491911889:17573..17603TCONS_00035855-exon-sc0001377-1491911889:17573..17603Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1491911889:16941..17018TCONS_00035855-exon-sc0001377-1491911889:16941..17018Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1491911889:14189..14250TCONS_00035855-exon-sc0001377-1491911889:14189..14250Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1491911889:13814..13884TCONS_00035855-exon-sc0001377-1491911889:13814..13884Clytia hemisphaericaexon
TCONS_00035855-exon-sc0001377-1491911889:11186..11607TCONS_00035855-exon-sc0001377-1491911889:11186..11607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001377supercontigsc0001377:11186..17871 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
119.056	112.959	91.2233	86.7138	36.659	23.9731	25.1405	27.9828	22.872	18.6471	17.1497	14.8867	9.67378	8.01549	7.68648	6.96936	17.4101	17.2323	7.58577	7.83872	17.8762	17.4186	52.8924	44.8869	41.8877	33.3947	19.1161	18.2255	28.5827	28.3597
Blast
[Close]
BLAST of TCONS_00035855 vs. Swiss-Prot (Human)
Match: SCOC (Short coiled-coil protein OS=Homo sapiens GN=SCOC PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.505e-23
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:  238 DAMDGD---EKEEKSRLIQQVFSLQNTLDDLSQRVDAVKDENTKLKSENQILGQYIENLMAASSVFQ 429
            DA+D +   E EEK+RLI QV  LQ+TL+DLS RVDAVK+EN KLKSENQ+LGQYIENLM+ASSVFQ
Sbjct:   84 DAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQ 150
The following BLAST results are available for this feature:
BLAST of TCONS_00035855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCOC1.505e-2373.13Short coiled-coil protein OS=Homo sapiens GN=SCOC ... [more]
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