TCONS_00035850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035850
Unique NameTCONS_00035850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035850 ID=TCONS_00035850|Name=TCONS_00035850|organism=Clytia hemisphaerica|type=transcript|length=2094bp
TGACAGCTTGGTAGATTTCATGTCATCCAAAATACAATGTAAAGGGTTTT
AAATGGACGTCAATCAATGTTTAAAAGAATATAATGAAAGATCACCAGAC
AAAATGTTGATGTTTTCAATTCTCATTCTGCAATCAATCTTCTTCATCTC
GGCTTCACCGACGCCTGAAAATACCGAGAACGAACGAAAAACGACAAACG
ACAAGGGTAGAGAAACGAAAAGACGCGACCAACTGAGACGTATTATTGAA
AACACTCTTGGCTTGGATGATTCAGAAACTTCTTCAAATGCGTTGAAGAA
ATTTAAAGAATCCATTAATCCAGACCTTGTGAAAAATTTCTTGAGTCCAT
CAAAGACAGAAGAAgatggaaaaaatggaaaagaacTCATCTTTTTGTGG
AAAAATGATCACCTACTCGAACaatgTCAAAACGGCCATTTCATCAAAGA
CCTTGAATTAAGGTTCCTTTTCaacttggaaatttttcaaaagaacacCT
TAGCGAGCGCAAGGATACATTTCTTCAAGAAAAACGAGACCCCGGCTGAG
CGTATTATCGTCAAAGAGATACCCAATGTGGGTACACATGAACATGTAAT
TAACAGCGCCCTAATTAACCATGACGGGTGGGCAGAGCTCGATATAACAA
AGCAAGTTAATTACTGGACAGCAGATTACGGGTTAAATGAATTTCGGACA
CTTCGACTAGGCTGTGAGGAAAAATGTTCGGAGCTTTATGTTGAGCATTG
CGACCCGAAAGTCATGCCTTTCTTATCCATTAGAATGAAGCCGAACGACG
AGAAAGAGTGAAGAGAAGAATGGCTAAGGAAATAAAGAGAGATGAGAAAT
TTGACGATTGAAAGAAGTACCGACACCAGATCTCAAGACCCTTAGACCGT
CCAAATCCATTTATGAAAACCAACTATCGAAGAATcagactaatatttct
aaaatcGAGGGTCCATTTTATTGCCGAACAATGCTGGATTATTCGGGCGA
CATATTTTAACTTCAGTAGatttaatttgaaaagaaatacatttataaaa
tcatttttggtatctgataaaataattatgttTGAAAATGACAATCGTAa
gagaaaatatatttgatgCTTAAACCGATACCCGAAAATTCGACTGTTTA
CAATATTAAGTTAAATAAGAAGTTAAATAGGTTCTATAGAAGATAACAGA
ACTCGTAACAGAACTCTTTGAGATTTGGTCAGGTTGACTGTTTGAACTGT
TCATTTTAGGGTGCTGATGATATTGAAGCCAATAATAGTCAACTCAATTA
GGGTgacaaattttaaggtttttcggATTCATTTTATCTTCTACCATGGA
AACGGTGCATAAGTAACTATGAAATGCAGCTAGGACTACGACTGTCTTTT
ACCATTATATCTCAGTAATGTTCCTTTGCTTTGGATCGTCCTTTATAATA
GGAgacaatattttttgaaatttttcccaATCTAATAGAGATAATCAAAA
TCAACAATCCCTTTATACAGTGTATGTATCTTTGAGCCATCTTGTGTTTT
CTCTAGCTCGCTCGTATTTTTCACCAAACCATTTTGTTGTAAAATTGCTT
GCCTTCTTCTCGTTTTGTTTTCATTCTGATCCCTCCAATGAATGTACAGA
GTTTCAAGTGCTAACGCGACCAGTGCAATGAGAAGAGAGATCAACACCAA
GATGACCATTCCACCAGCATACTCGTATTCAAATTGAAAAGCTCTTAGCT
CAGCAGCCGAGCACTTATTAATCCATTTCTCCATTAATTGATCAACCACT
TTTTTATCCTTAAGGTCACGGATGGCGTTCGATAAAATCCGCGTCAGTTG
AGAATTCTGACGTGTTCCGAAGGCGTTGGAGACGACAAATGTTTCTTTTC
TGACGATAATGTTTTCACACAAGTCAGCTTTTTTACCTTGGACGGCTGTT
AGGTGCCAGTACTCTTCTACGTATGCGtctaaaagcctaaaaagtaGAAT
GACCGACTTATcatggtaaaatttcaaacaaagcaAGGTTTCGTTTTAGG
TTGCATGCGTTTGTTATTGAGCTACATTTTTATTTAAACTCTAT
Run BLAST on NCBI

transcript from alignment at sc0001377:2863..8133-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035850 ID=TCONS_00035850|Name=TCONS_00035850|organism=Clytia hemisphaerica|type=transcript|length=5271bp|location=Sequence derived from alignment at sc0001377:2863..8133- (Clytia hemisphaerica)
TGACAGCTTGGTAGATTTCATGTCATCCAAAATACAATGTAAAGGGTTTT
AAATGGACGTCAATCAATGTTTAAAAGAATATAATGAAAGGTAAATATTT
GAAAGGAAAAATAAACAAACTTTCCTGGCTTCTTAAGTAGCAAGAGCTAT
CTGATTACCTTGTGTGTTTCTAGAGGTTGTTCTGTGTCCCTTGTGGATTT
GTTGATTTGACTTGACTTTTTCAATTTGTACACAATAAGCTTGTAATAGA
AAATATAGCTTCCTATGCTCAATTTGTAAATACTTAAAGGTTTTATTTTT
ATATAGGTGTGCCCGTTTCATATCACACATATTTCATATCAGCACAGTGT
CTGCCTATTGTTATTTGGTGCTGATATAAGCAAAAAATGGTTACCATTTC
CACTCTCTGACCAATTTTAGTAGTAAGCAAATGATATCACTTTTATTTAA
AAAGAAAACCTTTAATGAGTGAAGAATTAAGTGGATGGAAAGTTTGGCTC
AAGATTGTCAAAAGAGGTTCAGTTTAATTTTTGTTAAGTTTTTAGTGGCT
TTAGGTCCTTCGAAAAGTTCTTATCATTGATTGATTGATTGGTTTATTGA
TTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATT
GATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGTTTTCATGC
TTGCTAATTAAAGACTATACTTGTAATTTGTTCATGTTGTCCCCTCTCCT
CTCCTTTTGTTGCTGGTCAGGACCGGTTCCCGACCTCAAGACTTTCTTGG
TGAGAGAATATTTTGACATGCGGAATATTTTGTAACAACCTGAAGCAATG
TCTTAGAAACAATGATGTGTTTTTTCGAGGTTTGGTGCGACTTTCGAATG
AAATGACAAAAAAGGGAATTCCGATTGACCAATAACCTGCTTGATGTTGA
TGTAGGAGAAACACAATAAGTCCTTACAATAGATGGTCGGTCTTGGGTTT
CTCCTTATAAGGAAATACATGTAGGTGGAACTTGTGATATAAATGCATTC
GAGATTATAAATAGGCTTTAAAAAAAAAGCTTTTTGGAATGTTTGGTTGA
TGTTTGGGTGTTTCAAAGTCCAACAGTTGAATCTAGAAAAGTCTTACTGG
TTACTTACGCTCTTGAAATAATCAAAGTGATGAATAGTCAAGTAAAAGAA
TTTCTTTCTAAGGTAACCTTAATATTCATAGATCACAGATGAATTGTAAG
CTTAACATCAGAATAGTGCTTTCTATCTTCGATATTTTGAAAAGCGACGA
CATAAAGGCATAAACTGTGATACTTACTGTGTCTATTAAGTCCATCAGAC
ATGACTTTTTAATTTACTTTGCTCAACCATAAAATCCATTTCTCGAGCAA
GTAATAAACGAATCCCTTCTCCCAGATTTTATTACCTCTTTCTTTCTGGT
ATGGTGGAACAGTCCAATACAAAGAAAAAGGGTGTGTCCTAAAGTTGTAT
AACATTTCCTTCCATTAAGGAGAAAAAAGGAGGGAAAGAAAAATATTGTA
GTGACTTTTAGGGTTCAGTGCGATTTTGCAATACCTTTTGATGTTTAAAC
AATCTATTTCGCAATTACTATGTTTCCAATAAATATTGCTTTAACCTTTA
CAGTGAATATCTTTGCAGTGTGATCCAAATTTGTGCCTCGTATAAAAGTT
GGACAAATTCCAAATCTTGATTGTCTTTTTCAGTATAATTTAACAGACTC
CTCTGAGTGCAATCAGTGAGTACATTGAGAGGTCTTGATGAAGTTTTTTG
TACCATTTCATGCATTTTGTAGTTTTAAGGCTTGAATTTTTCTTGATTTT
CTCTTATGTACACTCCTTCTCACAGATCCTGTTGGAACTTTTCAGCCAAC
GGGGGGTAAAAATAAAATAACGAACTGAAACTCAATGAAGATTGATGTTC
GCATGTTTTATTCTATGGCTGGGGATTTGGATTCCATTGCTTTCAATACA
CTCTTCTCGAGATGCATAAGTTTATTGTTGTCCTCGTTTTCAAACAGATT
TCATTGCTATTTTGTATAGATGGTTTTAAGATTTTTATGTATTACCTGAA
ATAGACTATCTATCAGATTACAGCCCTGTTTCCAGTTAGTTAGTACTTCT
GTTGTTTAAAACTACTGTCTAAGCAAATGGTGGGAATATGTTAAATGATA
ACCTTAAAGCTTATAAAGCGAGAGGCATCTGATGAGAAGCAAATTCTTCT
GTTTTCCTGCTTTAATAAAGTCCATTTTTGGGCCCCTTTTGAAGGTAGTA
ATATTTGATCTTTATTATGGGTCAATCGTTAAAGATCCGAAATCTGACTG
ACGTCAGGTCATAAATCAGTCAGTAGCGATACAGAATAATGGAAAAAAGG
GATGTATCATAAATTCTACGACATGACAAGCTGTCAACTAAACGGACAGG
GGGTTGAATCACCGGAAGATAGAAATGAGGGTCATAAAATTTTTTATCGG
GTTTAATGAAGAGAATTCCCACTCGCATTGTTTGGCGTGTGTCATTTTTG
TCATTTTGATGTAAAATTACTGGAATAAAAGATAAATAAAGAGATTTATC
AAAGTGCGCATGTGCGAGTTTTGTAGGGTTTAAAATTAGTCAAAATCATC
AGAAACGCCTGTATGTACTGTGATATTTGAATGCTTGGTTCTTCGTTTTT
CTAAGCTTCATTTATGATGGAATTTGGGGTTTGGGCTTAAGCTTTTACGC
TAAAACGAAAACAGAATAAATCTCGTACCCAGAGCTACTTGTACCACTTG
TACCGTTTACTGATGGACGTGATACAACCTTTGGTGAGCGCTATCAGAAT
TATCAAAAAACGTGCTAAAGGACTGGATAGGAGTTAGACTAAATCTAAGC
CTACACACGTTAGACAGTAAAATGTTATATTGGGTATTAGTTTTGTAATT
TTCTTGAATTTGTTAATCCCGTTTTAGATCACCAGACAAAATGTTGATGT
TTTCAATTCTCATTCTGCAATCAATCTTCTTCATCTCGGCTTCACCGACG
CCTGAAAATACCGAGAACGAACGAAAAACGACAAACGACAAGGGTAGAGA
AACGAAAAGACGCGACCAACTGAGACGTATTATTGAAAACACTCTTGGCT
TGGATGATTCAGAAACTTCTTCAAATGCGTTGAAGAAATTTAAAGAATCC
ATTAATCCAGACCTTGTGAAAAATTTCTTGAGTCCATCAAAGACAGAAGA
AGATGGAAAAAATGGAAAAGAACTCATCTTTTTGTGGAAAAATGATCACC
TACTCGAACGTGAGTTTTTTTGTTTTAACCCAACCAAGCACAATCACGTT
TAGATAAACTACTCTGAAACATACACCACCACCAACTCTGTTAGGTGACA
AAGTGTTAAAATAAAGATTAAAGCCAAATCTATAGACTGGCAGGAGATTT
CTTAACATTTAAACACAAAGTTTTGTCTGAGTTTGTTAGATGAATTTTTA
AATATAGACCCAGAAGACGAGCTGTATTAAGTAGCTTTTTTAGTCATGAA
CACTCCACCTTTCGTTAAACGAACGATAATATTTCAATTTTCTTTTCAGA
ATGTCAAAACGGCCATTTCATCAAAGACCTTGAATTAAGGTTCCTTTTCA
ACTTGGAAATTTTTCAAAAGAACACCTTAGCGAGCGCAAGGATACATTTC
TTCAAGAAAAACGAGACCCCGGCTGAGCGTATTATCGTCAAAGAGATACC
CAATGTGGGTACACATGAACATGTAATTAACAGCGCCCTAATTAACCATG
ACGGGTGGGCAGAGCTCGATATAACAAAGCAAGTTAATTACTGGACAGCA
GATTACGGGTTAAATGAATTTCGGACACTTCGACTAGGCTGTGAGGAAAA
ATGTTCGGAGCTTTATGTTGAGCATTGCGACCCGAAAGTCATGCCTTTCT
TATCCATTAGAATGAAGCCGAACGACGAGAAAGAGTGAAGAGAAGAATGG
CTAAGGAAATAAAGAGAGATGAGAAATTTGACGATTGAAAGAAGTACCGA
CACCAGATCTCAAGACCCTTAGACCGTCCAAATCCATTTATGAAAACCAA
CTATCGAAGAATCAGACTAATATTTCTAAAATCGAGGGTCCATTTTATTG
CCGAACAATGCTGGATTATTCGGGCGACATATTTTAACTTCAGTAGATTT
AATTTGAAAAGAAATACATTTATAAAATCATTTTTGGTATCTGATAAAAT
AATTATGTTTGAAAATGACAATCGTAAGAGAAAATATATTTGATGCTTAA
ACCGATACCCGAAAATTCGACTGTTTACAATATTAAGTTAAATAAGAAGT
TAAATAGGTTCTATAGAAGATAACAGAACTCGTAACAGAACTCTTTGAGA
TTTGGTCAGGTTGACTGTTTGAACTGTTCATTTTAGGGTGCTGATGATAT
TGAAGCCAATAATAGTCAACTCAATTAGGGTGACAAATTTTAAGGTTTTT
CGGATTCATTTTATCTTCTACCATGGAAACGGTGCATAAGTAACTATGAA
ATGCAGCTAGGACTACGACTGTCTTTTACCATTATATCTCAGTAATGTTC
CTTTGCTTTGGATCGTCCTTTATAATAGGAGACAATATTTTTTGAAATTT
TTCCCAATCTAATAGAGATAATCAAAATCAACAATCCCTTTATACAGTGT
ATGTATCTTTGAGCCATCTTGTGTTTTCTCTAGCTCGCTCGTATTTTTCA
CCAAACCATTTTGTTGTAAAATTGCTTGCCTTCTTCTCGTTTTGTTTTCA
TTCTGATCCCTCCAATGAATGTACAGAGTTTCAAGTGCTAACGCGACCAG
TGCAATGAGAAGAGAGATCAACACCAAGATGACCATTCCACCAGCATACT
CGTATTCAAATTGAAAAGCTCTTAGCTCAGCAGCCGAGCACTTATTAATC
CATTTCTCCATTAATTGATCAACCACTTTTTTATCCTTAAGGTCACGGAT
GGCGTTCGATAAAATCCGCGTCAGTTGAGAATTCTGACGTGTTCCGAAGG
CGTTGGAGACGACAAATGTTTCTTTTCTGACGATAATGTTTTCACACAAG
TCAGCTTTTTTACCTTGGACGGCTGTTAGGTGCCAGTACTCTTCTACGTA
TGCGTCTAAAAGCCTAAAAAGTAGAATGACCGACTTATCATGGTAAAATT
TCAAACAAAGCAAGGTTTCGTTTTAGGTTGCATGCGTTTGTTATTGAGCT
ACATTTTTATTTAAACTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021053XLOC_021053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035850-exon-sc0001377-1575043694:8044..8133TCONS_00035850-exon-sc0001377-1575043694:8044..8133Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1575043694:4825..5156TCONS_00035850-exon-sc0001377-1575043694:4825..5156Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1575043694:2863..4534TCONS_00035850-exon-sc0001377-1575043694:2863..4534Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1510915933:8044..8133TCONS_00035850-exon-sc0001377-1510915933:8044..8133Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1510915933:4825..5156TCONS_00035850-exon-sc0001377-1510915933:4825..5156Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1510915933:2863..4534TCONS_00035850-exon-sc0001377-1510915933:2863..4534Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1491911889:8044..8133TCONS_00035850-exon-sc0001377-1491911889:8044..8133Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1491911889:4825..5156TCONS_00035850-exon-sc0001377-1491911889:4825..5156Clytia hemisphaericaexon
TCONS_00035850-exon-sc0001377-1491911889:2863..4534TCONS_00035850-exon-sc0001377-1491911889:2863..4534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001377supercontigsc0001377:2863..8133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.895693	0.46171	0	0	4.20841	1.9668	0	0	0	0	0	0	11.0595	0.958073	15.4836	7.44104
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top