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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035849 ID=TCONS_00035849|Name=TCONS_00035849|organism=Clytia hemisphaerica|type=transcript|length=2185bp
aaaCGCCTGTATGTACTGTGATATTTGAATGCTTGGTTCTTCGTTTTTCT
AAGCTTCATTTATGATGGAATTTGGGGTTTGGGCTTAAGCTTTTACGCTA
AAACGAAAACAGAAtaaatctcgtacccagagctaCTTGTACCACTTGTA
CCgtttactgatggacgtgatacaaCCTTTgATCACCAGACAAAATGTTG
ATGTTTTCAATTCTCATTCTGCAATCAATCTTCTTCATCTCGGCTTCACC
GACGCCTGAAAATACCGAGAACGAACGAAAAACGACAAACGACAAGGGTA
GAGAAACGAAAAGACGCGACCAACTGAGACGTATTATTGAAAACACTCTT
GGCTTGGATGATTCAGAAACTTCTTCAAATGCGTTGAAGAAATTTAAAGA
ATCCATTAATCCAGACCTTGTGAAAAATTTCTTGAGTCCATCAAAGACAG
AAGAAgatggaaaaaatggaaaagaacTCATCTTTTTGTGGAAAAATGAT
CACCTACTCGAACaatgTCAAAACGGCCATTTCATCAAAGACCTTGAATT
AAGGTTCCTTTTCaacttggaaatttttcaaaagaacacCTTAGCGAGCG
CAAGGATACATTTCTTCAAGAAAAACGAGACCCCGGCTGAGCGTATTATC
GTCAAAGAGATACCCAATGTGGGTACACATGAACATGTAATTAACAGCGC
CCTAATTAACCATGACGGGTGGGCAGAGCTCGATATAACAAAGCAAGTTA
ATTACTGGACAGCAGATTACGGGTTAAATGAATTTCGGACACTTCGACTA
GGCTGTGAGGAAAAATGTTCGGAGCTTTATGTTGAGCATTGCGACCCGAA
AGTCATGCCTTTCTTATCCATTAGAATGAAGCCGAACGACGAGAAAGAGT
GAAGAGAAGAATGGCTAAGGAAATAAAGAGAGATGAGAAATTTGACGATT
GAAAGAAGTACCGACACCAGATCTCAAGACCCTTAGACCGTCCAAATCCA
TTTATGAAAACCAACTATCGAAGAATcagactaatatttctaaaatcGAG
GGTCCATTTTATTGCCGAACAATGCTGGATTATTCGGGCGACATATTTTA
ACTTCAGTAGatttaatttgaaaagaaatacatttataaaatcatttttg
gtatctgataaaataattatgttTGAAAATGACAATCGTAagagaaaata
tatttgatgCTTAAACCGATACCCGAAAATTCGACTGTTTACAATATTAA
GTTAAATAAGAAGTTAAATAGGTTCTATAGAAGATAACAGAACTCGTAAC
AGAACTCTTTGAGATTTGGTCAGGTTGACTGTTTGAACTGTTCATTTTAG
GGTGCTGATGATATTGAAGCCAATAATAGTCAACTCAATTAGGGTgacaa
attttaaggtttttcggATTCATTTTATCTTCTACCATGGAAACGGTGCA
TAAGTAACTATGAAATGCAGCTAGGACTACGACTGTCTTTTACCATTATA
TCTCAGTAATGTTCCTTTGCTTTGGATCGTCCTTTATAATAGGAgacaat
attttttgaaatttttcccaATCTAATAGAGATAATCAAAATCAACAATC
CCTTTATACAGTGTATGTATCTTTGAGCCATCTTGTGTTTTCTCTAGCTC
GCTCGTATTTTTCACCAAACCATTTTGTTGTAAAATTGCTTGCCTTCTTC
TCGTTTTGTTTTCATTCTGATCCCTCCAATGAATGTACAGAGTTTCAAGT
GCTAACGCGACCAGTGCAATGAGAAGAGAGATCAACACCAAGATGACCAT
TCCACCAGCATACTCGTATTCAAATTGAAAAGCTCTTAGCTCAGCAGCCG
AGCACTTATTAATCCATTTCTCCATTAATTGATCAACCACTTTTTTATCC
TTAAGGTCACGGATGGCGTTCGATAAAATCCGCGTCAGTTGAGAATTCTG
ACGTGTTCCGAAGGCGTTGGAGACGACAAATGTTTCTTTTCTGACGATAA
TGTTTTCACACAAGTCAGCTTTTTTACCTTGGACGGCTGTTAGGTGCCAG
TACTCTTCTACGTATGCGtctaaaagcctaaaaagtaGAATGACCGACTT
ATcatggtaaaatttcaaacaaagcaAGGTTTCGTTTTAGGTTGCATGCG
TTTGTTATTGAGCTACATTTTTATTTAAACTCTAT Run BLAST on NCBI transcript from alignment at sc0001377:2863..5481- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035849 ID=TCONS_00035849|Name=TCONS_00035849|organism=Clytia hemisphaerica|type=transcript|length=2619bp|location=Sequence derived from alignment at sc0001377:2863..5481- (Clytia hemisphaerica)
AAACGCCTGTATGTACTGTGATATTTGAATGCTTGGTTCTTCGTTTTTCT
AAGCTTCATTTATGATGGAATTTGGGGTTTGGGCTTAAGCTTTTACGCTA
AAACGAAAACAGAATAAATCTCGTACCCAGAGCTACTTGTACCACTTGTA
CCGTTTACTGATGGACGTGATACAACCTTTGGTGAGCGCTATCAGAATTA
TCAAAAAACGTGCTAAAGGACTGGATAGGAGTTAGACTAAATCTAAGCCT
ACACACGTTAGACAGTAAAATGTTATATTGGGTATTAGTTTTGTAATTTT
CTTGAATTTGTTAATCCCGTTTTAGATCACCAGACAAAATGTTGATGTTT
TCAATTCTCATTCTGCAATCAATCTTCTTCATCTCGGCTTCACCGACGCC
TGAAAATACCGAGAACGAACGAAAAACGACAAACGACAAGGGTAGAGAAA
CGAAAAGACGCGACCAACTGAGACGTATTATTGAAAACACTCTTGGCTTG
GATGATTCAGAAACTTCTTCAAATGCGTTGAAGAAATTTAAAGAATCCAT
TAATCCAGACCTTGTGAAAAATTTCTTGAGTCCATCAAAGACAGAAGAAG
ATGGAAAAAATGGAAAAGAACTCATCTTTTTGTGGAAAAATGATCACCTA
CTCGAACGTGAGTTTTTTTGTTTTAACCCAACCAAGCACAATCACGTTTA
GATAAACTACTCTGAAACATACACCACCACCAACTCTGTTAGGTGACAAA
GTGTTAAAATAAAGATTAAAGCCAAATCTATAGACTGGCAGGAGATTTCT
TAACATTTAAACACAAAGTTTTGTCTGAGTTTGTTAGATGAATTTTTAAA
TATAGACCCAGAAGACGAGCTGTATTAAGTAGCTTTTTTAGTCATGAACA
CTCCACCTTTCGTTAAACGAACGATAATATTTCAATTTTCTTTTCAGAAT
GTCAAAACGGCCATTTCATCAAAGACCTTGAATTAAGGTTCCTTTTCAAC
TTGGAAATTTTTCAAAAGAACACCTTAGCGAGCGCAAGGATACATTTCTT
CAAGAAAAACGAGACCCCGGCTGAGCGTATTATCGTCAAAGAGATACCCA
ATGTGGGTACACATGAACATGTAATTAACAGCGCCCTAATTAACCATGAC
GGGTGGGCAGAGCTCGATATAACAAAGCAAGTTAATTACTGGACAGCAGA
TTACGGGTTAAATGAATTTCGGACACTTCGACTAGGCTGTGAGGAAAAAT
GTTCGGAGCTTTATGTTGAGCATTGCGACCCGAAAGTCATGCCTTTCTTA
TCCATTAGAATGAAGCCGAACGACGAGAAAGAGTGAAGAGAAGAATGGCT
AAGGAAATAAAGAGAGATGAGAAATTTGACGATTGAAAGAAGTACCGACA
CCAGATCTCAAGACCCTTAGACCGTCCAAATCCATTTATGAAAACCAACT
ATCGAAGAATCAGACTAATATTTCTAAAATCGAGGGTCCATTTTATTGCC
GAACAATGCTGGATTATTCGGGCGACATATTTTAACTTCAGTAGATTTAA
TTTGAAAAGAAATACATTTATAAAATCATTTTTGGTATCTGATAAAATAA
TTATGTTTGAAAATGACAATCGTAAGAGAAAATATATTTGATGCTTAAAC
CGATACCCGAAAATTCGACTGTTTACAATATTAAGTTAAATAAGAAGTTA
AATAGGTTCTATAGAAGATAACAGAACTCGTAACAGAACTCTTTGAGATT
TGGTCAGGTTGACTGTTTGAACTGTTCATTTTAGGGTGCTGATGATATTG
AAGCCAATAATAGTCAACTCAATTAGGGTGACAAATTTTAAGGTTTTTCG
GATTCATTTTATCTTCTACCATGGAAACGGTGCATAAGTAACTATGAAAT
GCAGCTAGGACTACGACTGTCTTTTACCATTATATCTCAGTAATGTTCCT
TTGCTTTGGATCGTCCTTTATAATAGGAGACAATATTTTTTGAAATTTTT
CCCAATCTAATAGAGATAATCAAAATCAACAATCCCTTTATACAGTGTAT
GTATCTTTGAGCCATCTTGTGTTTTCTCTAGCTCGCTCGTATTTTTCACC
AAACCATTTTGTTGTAAAATTGCTTGCCTTCTTCTCGTTTTGTTTTCATT
CTGATCCCTCCAATGAATGTACAGAGTTTCAAGTGCTAACGCGACCAGTG
CAATGAGAAGAGAGATCAACACCAAGATGACCATTCCACCAGCATACTCG
TATTCAAATTGAAAAGCTCTTAGCTCAGCAGCCGAGCACTTATTAATCCA
TTTCTCCATTAATTGATCAACCACTTTTTTATCCTTAAGGTCACGGATGG
CGTTCGATAAAATCCGCGTCAGTTGAGAATTCTGACGTGTTCCGAAGGCG
TTGGAGACGACAAATGTTTCTTTTCTGACGATAATGTTTTCACACAAGTC
AGCTTTTTTACCTTGGACGGCTGTTAGGTGCCAGTACTCTTCTACGTATG
CGTCTAAAAGCCTAAAAAGTAGAATGACCGACTTATCATGGTAAAATTTC
AAACAAAGCAAGGTTTCGTTTTAGGTTGCATGCGTTTGTTATTGAGCTAC
ATTTTTATTTAAACTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035849-exon-sc0001377-1575043694:5301..5481 | TCONS_00035849-exon-sc0001377-1575043694:5301..5481 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1575043694:4825..5156 | TCONS_00035849-exon-sc0001377-1575043694:4825..5156 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1575043694:2863..4534 | TCONS_00035849-exon-sc0001377-1575043694:2863..4534 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1510915933:5301..5481 | TCONS_00035849-exon-sc0001377-1510915933:5301..5481 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1510915933:4825..5156 | TCONS_00035849-exon-sc0001377-1510915933:4825..5156 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1510915933:2863..4534 | TCONS_00035849-exon-sc0001377-1510915933:2863..4534 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1491911889:5301..5481 | TCONS_00035849-exon-sc0001377-1491911889:5301..5481 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1491911889:4825..5156 | TCONS_00035849-exon-sc0001377-1491911889:4825..5156 | Clytia hemisphaerica | exon |
| TCONS_00035849-exon-sc0001377-1491911889:2863..4534 | TCONS_00035849-exon-sc0001377-1491911889:2863..4534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001377 | supercontig | sc0001377:2863..5481 - |
Blast
The following BLAST results are available for this feature:
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