TCONS_00035846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035846
Unique NameTCONS_00035846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035846 ID=TCONS_00035846|Name=TCONS_00035846|organism=Clytia hemisphaerica|type=transcript|length=659bp
CGacgaaacattttctttgacgAGATTTTCTATGCGGAAAATGTGACCTG
GAAAGAGCAGTAAGGTTGCATTGTTGTAAATTTTGAATGGCTTTTTGTAC
AGTTATTaagtgaaaaattaatttgaatgACGTGATTTGCACagtaaaca
tgagcaactggcatcattcttttcacatacagttgacgctaTTCCATCAT
CACAAAACTCGTCAAACGCATTTAAAAGAGTCAGATAGGAATCGGAACCA
TCCATATAATGAACATAGTCAGCTACAATTTGATTGGACATCCCTTTCAG
TCTTTTCTCATCTTCTATTCTACCAGGCATTCCACTATGATTGTTGATAA
CCATTAAACGATCCATGGGCACTTCATCAACAAGACACCACCTTTTGTCG
GACTCTACTCTACTGAGAGCTGTATAGGTAGTGCCTAACGATAAAGATTC
CATGAAAGTTTTCTGCTGTAATTTAACGCGCATGTGCGTAGCTGGTTTAC
CTTCTCCAATCGTCATTCCTTGACTTTTAGCAATAGGAATACTATATGCA
GCAAGTAGTGGAAATCCAGTGCGCGAACAGCTTTGATGAGCGTCACATCT
AGACTTCATTGGGACAATCGGTACCCATTTAGGATGTTCTTCATTCCAAA
CAGGTCCAT
Run BLAST on NCBI

protein sequence of TCONS_00035846-protein

>TCONS_00035846-protein ID=TCONS_00035846-protein|Name=TCONS_00035846-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
GPVWNEEHPKWVPIVPMKSRCDAHQSCSRTGFPLLAAYSIPIAKSQGMTI
GEGKPATHMRVKLQQKTFMESLSLGTTYTALSRVESDKRWCLVDEVPMDR
LMVINNHSGMPGRIEDEKRLKGMSNQIVADYVHYMDGSDSYLTLLNAFDE
FCDDGIASTVCEKNDASCSCLLCKSRHSN
Run BLAST on NCBI

transcript from alignment at sc0001376:16379..17037

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035846 ID=TCONS_00035846|Name=TCONS_00035846|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at sc0001376:16379..17037 (Clytia hemisphaerica)
ATGGACCTGTTTGGAATGAAGAACATCCTAAATGGGTACCGATTGTCCCA
ATGAAGTCTAGATGTGACGCTCATCAAAGCTGTTCGCGCACTGGATTTCC
ACTACTTGCTGCATATAGTATTCCTATTGCTAAAAGTCAAGGAATGACGA
TTGGAGAAGGTAAACCAGCTACGCACATGCGCGTTAAATTACAGCAGAAA
ACTTTCATGGAATCTTTATCGTTAGGCACTACCTATACAGCTCTCAGTAG
AGTAGAGTCCGACAAAAGGTGGTGTCTTGTTGATGAAGTGCCCATGGATC
GTTTAATGGTTATCAACAATCATAGTGGAATGCCTGGTAGAATAGAAGAT
GAGAAAAGACTGAAAGGGATGTCCAATCAAATTGTAGCTGACTATGTTCA
TTATATGGATGGTTCCGATTCCTATCTGACTCTTTTAAATGCGTTTGACG
AGTTTTGTGATGATGGAAtagcgtcaactgtatgtgaaaagaatgatgcc
agttgctcatgtttactGTGCAAATCACGTcattcaaattaatttttcac
ttAATAACTGTACAAAAAGCCATTCAAAATTTACAACAATGCAACCTTAC
TGCTCTTTCCAGGTCACATTTTCCGCATAGAAAATCTcgtcaaagaaaat
gtttcgtCG

Coding sequence (CDS) from alignment at sc0001376:16379..17037

>TCONS_00035846 ID=TCONS_00035846|Name=TCONS_00035846|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at sc0001376:16379..17037 (Clytia hemisphaerica)
GGACCTGTTTGGAATGAAGAACATCCTAAATGGGTACCGATTGTCCCAAT
GAAGTCTAGATGTGACGCTCATCAAAGCTGTTCGCGCACTGGATTTCCAC
TACTTGCTGCATATAGTATTCCTATTGCTAAAAGTCAAGGAATGACGATT
GGAGAAGGTAAACCAGCTACGCACATGCGCGTTAAATTACAGCAGAAAAC
TTTCATGGAATCTTTATCGTTAGGCACTACCTATACAGCTCTCAGTAGAG
TAGAGTCCGACAAAAGGTGGTGTCTTGTTGATGAAGTGCCCATGGATCGT
TTAATGGTTATCAACAATCATAGTGGAATGCCTGGTAGAATAGAAGATGA
GAAAAGACTGAAAGGGATGTCCAATCAAATTGTAGCTGACTATGTTCATT
ATATGGATGGTTCCGATTCCTATCTGACTCTTTTAAATGCGTTTGACGAG
TTTTGTGATGATGGAAtagcgtcaactgtatgtgaaaagaatgatgccag
ttgctcatgtttactGTGCAAATCACGTcattcaaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021050XLOC_021050Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035846-proteinTCONS_00035846-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035846-exon-sc0001376-1491911889:16379..17037TCONS_00035846-exon-sc0001376-1491911889:16379..17037Clytia hemisphaericaexon
TCONS_00035846-exon-sc0001376-1510915933:16379..17037TCONS_00035846-exon-sc0001376-1510915933:16379..17037Clytia hemisphaericaexon
TCONS_00035846-exon-sc0001376-1575043694:16379..17037TCONS_00035846-exon-sc0001376-1575043694:16379..17037Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001376supercontigsc0001376:16379..17037 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.157679	0.153762	0.089266	0.261999	0.425278	0	0.202721	0.0948925	0.132873	0.164585	0	0.262533	0.471903	0.0544528	0.179071	0.288255	0.236738	0.181986	0	0	0.457359	0.334625	0.0903957	0	0.507878	0.453269	0	0.115372	0	0.0891544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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