TCONS_00035844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035844
Unique NameTCONS_00035844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035844 ID=TCONS_00035844|Name=TCONS_00035844|organism=Clytia hemisphaerica|type=transcript|length=571bp
TCGCCATGGCGATATATGCTGTCGTAATAATACCCCTGATCTTCATGCTA
GTCAATGCGAGCATAACAAAAAACCACGCTAATGATTGAATGTTGGCGTC
AGCTTCAGTGTCAGCGTCGGCTGCAACGTGAGTGATGTAGGTAACTTGAC
CAGTCCGGTGGGGCTCACGGTAATCCACTCTCTTTGTCTGACGTAAGTTG
GACATACAGTGAACGGACAGTTGGTTTGGAAATGTTGAGTAGTTCCGGAA
TTATGATACGAGTTCCGGAGTGACGAGTTGTACGAGTTTCAGAGTGACGA
GTTGTACGACTTCCGGAGTGACGAGTTGTACGAGTTCAGGAGTGACGAGT
TGTACGAGTTCACGGGTGACGAGTTCCGGAGTGACGAGTTGTACGAGTTC
CGGAAAGATGAGTTGATCCGAGTCAGTCCGGAGAGATGAGTTGATCCGAG
TTAGTCTGGAGAAATGAGTTGATCCGGAGAGAACGATGTTCCGGAATGAA
GAAACGATTCGGACGAATGAGCAAAGTAGAAGAATCTGTTTGAATGTGGG
CCTAGTGCATCGCACCTGGGG
Run BLAST on NCBI

transcript from alignment at sc0001376:2434..3004

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035844 ID=TCONS_00035844|Name=TCONS_00035844|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0001376:2434..3004 (Clytia hemisphaerica)
CCCCAGGTGCGATGCACTAGGCCCACATTCAAACAGATTCTTCTACTTTG
CTCATTCGTCCGAATCGTTTCTTCATTCCGGAACATCGTTCTCTCCGGAT
CAACTCATTTCTCCAGACTAACTCGGATCAACTCATCTCTCCGGACTGAC
TCGGATCAACTCATCTTTCCGGAACTCGTACAACTCGTCACTCCGGAACT
CGTCACCCGTGAACTCGTACAACTCGTCACTCCTGAACTCGTACAACTCG
TCACTCCGGAAGTCGTACAACTCGTCACTCTGAAACTCGTACAACTCGTC
ACTCCGGAACTCGTATCATAATTCCGGAACTACTCAACATTTCCAAACCA
ACTGTCCGTTCACTGTATGTCCAACTTACGTCAGACAAAGAGAGTGGATT
ACCGTGAGCCCCACCGGACTGGTCAAGTTACCTACATCACTCACGTTGCA
GCCGACGCTGACACTGAAGCTGACGCCAACATTCAATCATTAGCGTGGTT
TTTTGTTATGCTCGCATTGACTAGCATGAAGATCAGGGGTATTATTACGA
CAGCATATATCGCCATGGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021048XLOC_021048Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035844-exon-sc0001376-1491911889:2434..3004TCONS_00035844-exon-sc0001376-1491911889:2434..3004Clytia hemisphaericaexon
TCONS_00035844-exon-sc0001376-1510915933:2434..3004TCONS_00035844-exon-sc0001376-1510915933:2434..3004Clytia hemisphaericaexon
TCONS_00035844-exon-sc0001376-1575043694:2434..3004TCONS_00035844-exon-sc0001376-1575043694:2434..3004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001376supercontigsc0001376:2434..3004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.649512	2.31474	1.50186	1.64183	0.898163	1.00382	0.430802	0.961416	0.432149	1.03125	0	0.609597	0.13036	0.0695141	0.222601	0.276592	0.262723	0.452453	0.104181	0.654109	0	0.693284	0.224741	0.485458	0.71021	1.15172	0.353783	0.286837	0.453923	0.41189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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