TCONS_00035843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035843
Unique NameTCONS_00035843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035843 ID=TCONS_00035843|Name=TCONS_00035843|organism=Clytia hemisphaerica|type=transcript|length=407bp
AACGAAAATTCATAAATATTTGACAAGACAAAATTTGATCCTAATTAGAG
AAAATATGACTAATTGACTAATTAACGGAAATGATTAAACTGAgataaat
atgagaaaaatgaaTGACAAACTTACAGAGAATTCTAGAACTTAAATCCT
AACTTAACTTAACCTAAAAATGTGTAAAAcagaaaaatgccaaaaagaaa
gagaaaaatgaggCCAAACAGAGAAGACCAGAGGCCAGACAAAAACCTAA
CCTAAAGCCtatgaaaaagaacaaatgGAAACAGCAGAAAAACTCACCAG
CTGGCCACGAGTGAGATGCTGTGTAGATGCTGACCAGAAAGGTAGTGAGA
ACTAGAGGCGAGTAATCACTACAAAAAGAAACTGGATATGAAGATACTTT
GCCATAA
Run BLAST on NCBI

transcript from alignment at sc0001376:1953..2359

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035843 ID=TCONS_00035843|Name=TCONS_00035843|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0001376:1953..2359 (Clytia hemisphaerica)
TTATGGCAAAGTATCTTCATATCCAGTTTCTTTTTGTAGTGATTACTCGC
CTCTAGTTCTCACTACCTTTCTGGTCAGCATCTACACAGCATCTCACTCG
TGGCCAGCTGGTGAGTTTTTCTGCTGTTTCcatttgttctttttcataGG
CTTTAGGTTAGGTTTTTGTCTGGCCTCTGGTCTTCTCTGTTTGGcctcat
ttttctctttctttttggcatttttctgTTTTACACATTTTTAGGTTAAG
TTAAGTTAGGATTTAAGTTCTAGAATTCTCTGTAAGTTTGTCAttcattt
ttctcatatttatcTCAGTTTAATCATTTCCGTTAATTAGTCAATTAGTC
ATATTTTCTCTAATTAGGATCAAATTTTGTCTTGTCAAATATTTATGAAT
TTTCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021047XLOC_021047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035843-exon-sc0001376-1491911889:1953..2359TCONS_00035843-exon-sc0001376-1491911889:1953..2359Clytia hemisphaericaexon
TCONS_00035843-exon-sc0001376-1510915933:1953..2359TCONS_00035843-exon-sc0001376-1510915933:1953..2359Clytia hemisphaericaexon
TCONS_00035843-exon-sc0001376-1575043694:1953..2359TCONS_00035843-exon-sc0001376-1575043694:1953..2359Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001376supercontigsc0001376:1953..2359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56999	2.24217	2.95484	1.8507	1.20817	0.763773	1.38219	0.646994	0.75496	0.93514	0	0.119333	0.715004	0	0.203489	0.545938	0.13451	0.275737	0.297226	1.14449	1.27476	0.35527	2.73107	2.05457	0	0.171693	0.913208	0.989452	1.59101	1.22008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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