TCONS_00035840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035840
Unique NameTCONS_00035840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035840 ID=TCONS_00035840|Name=TCONS_00035840|organism=Clytia hemisphaerica|type=transcript|length=613bp
TCAGACTTTTGCCTCATTTGGTCTGCAAACGGATGTTTTATGTGTCTTCG
TACTAccttggaaaattttttgaaggctGGAAGAAAATCAACCAACACTC
GAGCAAATAAGATTGTGTAATTCGTGATCATTACATTAACATAACAGTTC
GATATTGGTCAATCTTACCATCGCTTTGAAGGACTCGCCGTTCAACAGCC
ATCGTATGAAACCAATGAAAACTTTTGTTTGGGTTGCCAATACTTTGGTG
ATGAGGTGCCACAGTACCGTCAACATTGTTCCTAGAAAGCTTGAAGAAAC
TGCTTCTTCAACACGCTTTTTCCACTCCGTGATCTTCTGGTCGTGGTTTT
CCGCCAAAGTCTTATGCTTGTTCCGAGCTGTGGAGTAACAATTAGTCACG
CCCATCTTGTTTAACCAAGCAAAGGATGCTTTGTTACCACCGGCAGCCAT
GAGAAGCTAGTCGTTCCAGTGTGCGACGATGCAATATTTGTTTAGACCCC
AACATGCTTTGAAGATTAAAAAGTAACACAGTCTGATCGCCTTATACTTA
TCTTCTGATTCGGCACCTCTGGCCCATGGCTGATTGcagtatttttagtt
ttcattttttcag
Run BLAST on NCBI

transcript from alignment at sc0001376:13458..14700-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035840 ID=TCONS_00035840|Name=TCONS_00035840|organism=Clytia hemisphaerica|type=transcript|length=1243bp|location=Sequence derived from alignment at sc0001376:13458..14700- (Clytia hemisphaerica)
TCAGACTTTTGCCTCATTTGGTCTGCAAACGGATGTTTTATGTGTCTTCG
TACTACCTTGGAAAATTTTTTGAAGGCTGGAAGAAAATCAACCAACACTC
GAGCAAATAAGATTGTGTAATTCGTGATCATTACATTGCTGGTATTCTTC
ATTTGTTTATACTCTTCAGGCTTCCTGAAATCTAGACGTGTGACAATACA
TTTACATCTTACACCTACAGTATCAATGACTGTCTGTTTATATGAGAGCT
TTGGGGGCAATTAGAGGTCCGATATGACTGGGATTTCGCACAGCTTCTCT
TTGGGTGAATATCTTGAGTTAAATTTGTTTATTGTGACCCAGGGAAGAGT
AATTATGTGAACTGTTAATTTGGGTTGCCTTTCCTGAAGGCTATCGTTAC
ACTCTTGGCTATTGTTGGCTACCTGCCATCTAAACAATTTCTCTTTTTTT
AAATGCCAGTCAATTTCTAAGACAGAACACTATTCAGCATGGCTAAGCCA
GTGTTTTATTTTCTCTTTCAGAACATAACAGTTCGATATTGGTCAATCTT
ACCATCGCTTTGAAGGACTCGCCGTTCAACAGCCATCGTATGAAACCAAT
GAAAACTTTTGTTTGGGTTGCCAATACTTTGGTGATGAGGTGCCACAGTA
CCGTCAACATTGTTCCTAGAAAGCTTGAAGGTAACAGTGAAATTTATAGC
CTTAGGAAGTATTCTATCATGTATCACTGTTTACGCAGTATAGAGAAAGA
AGAAAAAATAATATATCTCCTTTTAAAGCCTTAAATCGCAGTGTCATAAA
TCTCCCAGGCTTGTAAGGCTCAAAAGCATCGTCACTAAAAGGCTGCTTGA
ATAGCAATTCATGTGGAAACAAAATTCAATGTTTTACTTTTACTTACATC
CGGTCCCTCTTTAACATCTTTTATAGAAACTGCTTCTTCAACACGCTTTT
TCCACTCCGTGATCTTCTGGTCGTGGTTTTCCGCCAAAGTCTTATGCTTG
TTCCGAGCTGTGGAGTAACAATTAGTCACGCCCATCTTGTTTAACCAAGC
AAAGGATGCTTTGTTACCACCGGCAGCCATGAGAAGCTAGTCGTTCCAGT
GTGCGACGATGCAATATTTGTTTAGACCCCAACATGCTTTGAAGATTAAA
AAGTAACACAGTCTGATCGCCTTATACTTATCTTCTGATTCGGCACCTCT
GGCCCATGGCTGATTGCAGTATTTTTAGTTTTCATTTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021045XLOC_021045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035840-exon-sc0001376-1575043694:14564..14700TCONS_00035840-exon-sc0001376-1575043694:14564..14700Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1575043694:14021..14179TCONS_00035840-exon-sc0001376-1575043694:14021..14179Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1575043694:13458..13774TCONS_00035840-exon-sc0001376-1575043694:13458..13774Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1510915933:14564..14700TCONS_00035840-exon-sc0001376-1510915933:14564..14700Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1510915933:14021..14179TCONS_00035840-exon-sc0001376-1510915933:14021..14179Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1510915933:13458..13774TCONS_00035840-exon-sc0001376-1510915933:13458..13774Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1491911889:14564..14700TCONS_00035840-exon-sc0001376-1491911889:14564..14700Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1491911889:14021..14179TCONS_00035840-exon-sc0001376-1491911889:14021..14179Clytia hemisphaericaexon
TCONS_00035840-exon-sc0001376-1491911889:13458..13774TCONS_00035840-exon-sc0001376-1491911889:13458..13774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001376supercontigsc0001376:13458..14700 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.72523	0.386812	1.26824	0	2.4244e-08	0.0948543	3.22756e-09	3.08599e-09	0.627068	0.483877	0	0.426106	0.706611	0	0.0852675	0	0	0	1.23525	0	0.550788	0.438703	0	0.664447	0	0	0.237232	0.922591	0.0675745	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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