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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035838 ID=TCONS_00035838|Name=TCONS_00035838|organism=Clytia hemisphaerica|type=transcript|length=680bp
AATCAGCCATGGGCCAGAGGTGCCGAATCAGAAGATAAGTATAAGGCGAT
CAGACTGTGTTACTTTTTAATCTTCAAAGCATGTTGGGGTCTAAACAAAT
ATTGCATCGTCGCACACTGGAACGACTAGCTTCTCATGGCTGCCGGTGGT
AACAAAGCATCCTTTGCTTGGTTAAACAAGATGGGCGTGACTAATTGTTA
CTCCACAGCTCGGAACAAGCATAAGACTTTGGCGGAAAACCACGACCAGA
AGATCACGGAGTGGAAAAAGCGTGTTGAAGAAGCAGTTTCTATAAAAGAT
GTTAAAGAGGGACCGGATCTTTCTAGGAACAATGTTGACGGTACTGTGGC
ACCTCATCACCAAAGTATTGGCAACCCAAACAAAAGTTTTCATTGGTTTC
ATACGATGGCTGTTGAACGGCGAGTCCTTCAAAGCGATGATTTCAGGAAG
CCTGAAGAGTATAAACAAATGAAGAATACCAGCAATGTAATGATCACGAA
TTACACAATCTTATTTGCTCGAGTGTTGGTTGATTTTCTTCCagccttca
aaaaattttccaaggTAGTACGAAGACACATAAAACATCCGTTTGCAGAC
CAAATGAGGCAAAAGTCTGATATGGGAAGTCAGCCTCAAAACAATCACCA
GCGGGAACTAAAAAGGATTTTATAGACTTT Run BLAST on NCBI protein sequence of TCONS_00035838-protein >TCONS_00035838-protein ID=TCONS_00035838-protein|Name=TCONS_00035838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MAAGGNKASFAWLNKMGVTNCYSTARNKHKTLAENHDQKITEWKKRVEEA
VSIKDVKEGPDLSRNNVDGTVAPHHQSIGNPNKSFHWFHTMAVERRVLQS
DDFRKPEEYKQMKNTSNVMITNYTILFARVLVDFLPAFKKFSKVVRRHIK
HPFADQMRQKSDMGSQPQNNHQRELKRIL Run BLAST on NCBI transcript from alignment at sc0001376:13486..14760+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035838 ID=TCONS_00035838|Name=TCONS_00035838|organism=Clytia hemisphaerica|type=transcript|length=1275bp|location=Sequence derived from alignment at sc0001376:13486..14760+ (Clytia hemisphaerica)
AATCAGCCATGGGCCAGAGGTGCCGAATCAGAAGATAAGTATAAGGCGAT
CAGACTGTGTTACTTTTTAATCTTCAAAGCATGTTGGGGTCTAAACAAAT
ATTGCATCGTCGCACACTGGAACGACTAGCTTCTCATGGCTGCCGGTGGT
AACAAAGCATCCTTTGCTTGGTTAAACAAGATGGGCGTGACTAATTGTTA
CTCCACAGCTCGGAACAAGCATAAGACTTTGGCGGAAAACCACGACCAGA
AGATCACGGAGTGGAAAAAGCGTGTTGAAGAAGCAGTTTCTATAAAAGAT
GTTAAAGAGGGACCGGATGTAAGTAAAAgtaaaacattgaattttgttTC
CACATGAATTGCTATTCAAGCAGCCTTTTAGTGACGATGCTTTTGAGCCT
TACAAGCCTGGGAGATTTATGACACTGCGATTTAAGGCTTTAAAAGgaga
tatattattttttcttctttctctaTACTGCGTAAACAGTGATACATGAT
AGAATACTTCCTAAGGCTATAAATTTCACTGTTACCTTCAAGCTTTCTAG
GAACAATGTTGACGGTACTGTGGCACCTCATCACCAAAGTATTGGCAACC
CAAACAAAAGTTTTCATTGGTTTCATACGATGGCTGTTGAACGGCGAGTC
CTTCAAAGCGATGGTAAGATTGACCAATATCGAACTGTTATGTTCTgaaa
gagaaaataaaacacTGGCTTAGCCATGCTGAATAGTGTTCTGTCTTAGA
AATTGACTGGcatttaaaaaaagagaaattgttTAGATGGCAGGTAGCCA
ACAATAGCCAAGAGTGTAACGATAGCCTTCAGGAAAGGCAACCCAAATTA
ACAGTTCACATAATTACTCTTCCCTGGGTCACAATAAACAAATTTAACTC
AAGATATTCACCCAAAGAGAAGCTGTGCGAAATCCCAGTCATATCGGACC
TCTAATTGCCCCCAAAGCTCTCATATAAACAGACAGTCATTGATACTGTA
GGTGTAAGATGTAAATGTATTGTCACACGTCTAGATTTCAGGAAGCCTGA
AGAGTATAAACAAATGAAGAATACCAGCAATGTAATGATCACGAATTACA
CAATCTTATTTGCTCGAGTGTTGGTTGATTTTCTTCCagccttcaaaaaa
ttttccaaggTAGTACGAAGACACATAAAACATCCGTTTGCAGACCAAAT
GAGGCAAAAGTCTGATATGGGAAGTCAGCCTCAAAACAATCACCAGCGGG
AACTAAAAAGGATTTTATAGACTTT Coding sequence (CDS) from alignment at sc0001376:13486..14760+ >TCONS_00035838 ID=TCONS_00035838|Name=TCONS_00035838|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0001376:13486..14760+ (Clytia hemisphaerica)
ATGGCTGCCGGTGGTAACAAAGCATCCTTTGCTTGGTTAAACAAGATGGG
CGTGACTAATTGTTACTCCACAGCTCGGAACAAGCATAAGACTTTGGCGG
AAAACCACGACCAGAAGATCACGGAGTGGAAAAAGCGTGTTGAAGAAGCA
GTTTCTATAAAAGATGTTAAAGAGGGACCGGATCTTTCTAGGAACAATGT
TGACGGTACTGTGGCACCTCATCACCAAAGTATTGGCAACCCAAACAAAA
GTTTTCATTGGTTTCATACGATGGCTGTTGAACGGCGAGTCCTTCAAAGC
GATGATTTCAGGAAGCCTGAAGAGTATAAACAAATGAAGAATACCAGCAA
TGTAATGATCACGAATTACACAATCTTATTTGCTCGAGTGTTGGTTGATT
TTCTTCCagccttcaaaaaattttccaaggTAGTACGAAGACACATAAAA
CATCCGTTTGCAGACCAAATGAGGCAAAAGTCTGATATGGGAAGTCAGCC
TCAAAACAATCACCAGCGGGAACTAAAAAGGATTTTATAGATGGCTGCCG
GTGGTAACAAAGCATCCTTTGCTTGGTTAAACAAGATGGGCGTGACTAAT
TGTTACTCCACAGCTCGGAACAAGCATAAGACTTTGGCGGAAAACCACGA
CCAGAAGATCACGGAGTGGAAAAAGCGTGTTGAAGAAGCAGTTTCTATAA
AAGATGTTAAAGAGGGACCGGATCTTTCTAGGAACAATGTTGACGGTACT
GTGGCACCTCATCACCAAAGTATTGGCAACCCAAACAAAAGTTTTCATTG
GTTTCATACGATGGCTGTTGAACGGCGAGTCCTTCAAAGCGATGATTTCA
GGAAGCCTGAAGAGTATAAACAAATGAAGAATACCAGCAATGTAATGATC
ACGAATTACACAATCTTATTTGCTCGAGTGTTGGTTGATTTTCTTCCagc
cttcaaaaaattttccaaggTAGTACGAAGACACATAAAACATCCGTTTG
CAGACCAAATGAGGCAAAAGTCTGATATGGGAAGTCAGCCTCAAAACAAT
CACCAGCGGGAACTAAAAAGGATTTTATAGATGGCTGCCGGTGGTAACAA
AGCATCCTTTGCTTGGTTAAACAAGATGGGCGTGACTAATTGTTACTCCA
CAGCTCGGAACAAGCATAAGACTTTGGCGGAAAACCACGACCAGAAGATC
ACGGAGTGGAAAAAGCGTGTTGAAGAAGCAGTTTCTATAAAAGATGTTAA
AGAGGGACCGGATCTTTCTAGGAACAATGTTGACGGTACTGTGGCACCTC
ATCACCAAAGTATTGGCAACCCAAACAAAAGTTTTCATTGGTTTCATACG
ATGGCTGTTGAACGGCGAGTCCTTCAAAGCGATGATTTCAGGAAGCCTGA
AGAGTATAAACAAATGAAGAATACCAGCAATGTAATGATCACGAATTACA
CAATCTTATTTGCTCGAGTGTTGGTTGATTTTCTTCCagccttcaaaaaa
ttttccaaggTAGTACGAAGACACATAAAACATCCGTTTGCAGACCAAAT
GAGGCAAAAGTCTGATATGGGAAGTCAGCCTCAAAACAATCACCAGCGGG
AACTAAAAAGGATTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035838-exon-sc0001376-1491911889:13486..13803 | TCONS_00035838-exon-sc0001376-1491911889:13486..13803 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1510915933:13486..13803 | TCONS_00035838-exon-sc0001376-1510915933:13486..13803 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1575043694:13486..13803 | TCONS_00035838-exon-sc0001376-1575043694:13486..13803 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1491911889:14028..14148 | TCONS_00035838-exon-sc0001376-1491911889:14028..14148 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1510915933:14028..14148 | TCONS_00035838-exon-sc0001376-1510915933:14028..14148 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1575043694:14028..14148 | TCONS_00035838-exon-sc0001376-1575043694:14028..14148 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1491911889:14520..14760 | TCONS_00035838-exon-sc0001376-1491911889:14520..14760 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1510915933:14520..14760 | TCONS_00035838-exon-sc0001376-1510915933:14520..14760 | Clytia hemisphaerica | exon |
| TCONS_00035838-exon-sc0001376-1575043694:14520..14760 | TCONS_00035838-exon-sc0001376-1575043694:14520..14760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001376 | supercontig | sc0001376:13486..14760 + |
Blast
The following BLAST results are available for this feature:
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