TCONS_00035834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035834
Unique NameTCONS_00035834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035834 ID=TCONS_00035834|Name=TCONS_00035834|organism=Clytia hemisphaerica|type=transcript|length=906bp
GGAAACTTCGGATGaagaaaaaccaaaaTAAAATCAAAGGTTACATCCAA
CACATTGTTTTGTTTGTAACTTGATCATCAATACTATCTAACGTCAAATA
ACCTTTTCAAGTACGTTGCTATGGATACAAGAATTTTAACTGCAAGAAGT
TAAGCAAGAAGAGTCTCTGTGTGGAAGAACATCAGTCACACACCATCAAA
AAAAGTCGTTTGTTATTCCATCTAAAGCAGACATGTGAAGGCTTTTTAAT
AACATCTTTGATGATACTCGCTGCAGCTTCACAACAACAACACACACATC
AACATGCTCTTAACATCTTTCGCACGCAACCTGGTACGCAACAACCGCTG
TCTGGCTGCAGCCATCACTTCAAGGAACTCTTCCACCGTACACCATGACa
ataaagcaaaaaatgaaaaactgattGGAACAGATAAAATGGTTAAACAG
ATGGAACGCATTGATGggaGAATTTTATCTAACTGCAGGTCTGAATATCG
TGTCAAGCATCACTACCAAGGCAAGGTCAAAGGTGTTGTCTTAGACTGGG
CTGGTACAGTGCTTGATTGCGGTGTTTACTCTCCTGCCATCGTTTTTATG
GAAGTTTTCAAACAAGAAGGTGTCCCTGTAACAATAGAGGAAGCACGCGA
ACCCATGGGTACGCATAAAATGGTGCATATTCGCCGCGTCACACAAAACG
aaagtgtccgaaaaagatGGTTTGAAAATCTTGGACGGTATCCAAATGAA
GACGATGTCAAGAGAATGTTCGATAATTTCATCCCAATGCAAGTAAGTTT
TGTTTGTCTAAATTTCACAGGTTCTGCTATATAAAACTTTTCTCAAACCC
TGGTTATATCTATCTAAGTAGAGGGTGAACTAACTTATTGGGTCACGTCA
CTAACG
Run BLAST on NCBI

protein sequence of TCONS_00035834-protein

>TCONS_00035834-protein ID=TCONS_00035834-protein|Name=TCONS_00035834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MLLTSFARNLVRNNRCLAAAITSRNSSTVHHDNKAKNEKLIGTDKMVKQM
ERIDGRILSNCRSEYRVKHHYQGKVKGVVLDWAGTVLDCGVYSPAIVFME
VFKQEGVPVTIEEAREPMGTHKMVHIRRVTQNESVRKRWFENLGRYPNED
DVKRMFDNFIPMQVSFVCLNFTGSAI
Run BLAST on NCBI

transcript from alignment at sc0001373:5623..6861-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035834 ID=TCONS_00035834|Name=TCONS_00035834|organism=Clytia hemisphaerica|type=transcript|length=1239bp|location=Sequence derived from alignment at sc0001373:5623..6861- (Clytia hemisphaerica)
GGAAACTTCGGATGAAGAAAAACCAAAAGTTTTGTAACTTTAATATATTT
CCCCCCTTTCCCGCCGACTGAGCTAGTGAATTTTGTTTTCTTTTAAACGA
AACCTGTTTTTATTACTTTAATGTTTTCAGTAAAATCAAAGGTTACATCC
AACACATTGTTTTGTTTGTAACTTGATCATCAATACTATCTAACGTCAAA
TAACCTTTTCAAGTACGTTGCTATGGATACAAGAATTTTAACTGCAAGAA
GTTAAGCAAGAAGAGTCTCTGTGTGGAAGAACATCAGTCACACACCATCA
AAAAAAGTCGTTTGTTATTCCATCTAAAGCAGACATGTGAAGGCTTTTTA
ATAACATCTTTGATGATACTCGCTGCAGCTTCACAACAACAACACACACA
TCAACATGCTCTTAACATCTTTCGCACGCAACCTGGTACGCAACAACCGC
TGTCTGGCTGCAGCCATCACTTCAAGGAACTCTTCCACCGTACACCATGA
CAATAAAGCAAAAAATGAAAAACTGATTGGAACAGATAAAATGGTTAAAC
AGATGGAACGCATTGATGGTATGATTATTGTTCGATATATATGAAATCCA
GCATATTTTTTTCCAAGTCTTTTTCCAAGTCATTTTCGAAGAAATTTTAT
TTTGTCGGTTTTATTTTTCGTGATTTTCTGCAACCAAATTTTGTATTCAT
TACTGTGTACAGATTTAACTTTCAAAAATGACGTAACCAGCAGTCTTTTT
TATGTCAGCATGATCCGGATTTTTTGGAATCTTTCATTTTCAATTTCAGG
GAGAATTTTATCTAACTGCAGGTCTGAATATCGTGTCAAGCATCACTACC
AAGGCAAGGTCAAAGGTGTTGTCTTAGACTGGGCTGGTACAGTGCTTGAT
TGCGGTGTTTACTCTCCTGCCATCGTTTTTATGGAAGTTTTCAAACAAGA
AGGTGTCCCTGTAACAATAGAGGAAGCACGCGAACCCATGGGTACGCATA
AAATGGTGCATATTCGCCGCGTCACACAAAACGAAAGTGTCCGAAAAAGA
TGGTTTGAAAATCTTGGACGGTATCCAAATGAAGACGATGTCAAGAGAAT
GTTCGATAATTTCATCCCAATGCAAGTAAGTTTTGTTTGTCTAAATTTCA
CAGGTTCTGCTATATAAAACTTTTCTCAAACCCTGGTTATATCTATCTAA
GTAGAGGGTGAACTAACTTATTGGGTCACGTCACTAACG

Coding sequence (CDS) from alignment at sc0001373:5623..6861-

>TCONS_00035834 ID=TCONS_00035834|Name=TCONS_00035834|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0001373:5623..6861- (Clytia hemisphaerica)
GGAGAATTTTATCTAACTGCAGGTCTGAATATCGTGTCAAGCATCACTAC
CAAGGCAAGGTCAAAGGTGTTGTCTTAGACTGGGCTGGTACAGTGCTTGA
TTGCGGTGTTTACTCTCCTGCCATCGTTTTTATGGAAGTTTTCAAACAAG
AAGGTGTCCCTGTAACAATAGAGGAAGCACGCGAACCCATGGGTACGCAT
AAAATGGTGCATATTCGCCGCGTCACACAAAACGAAAGTGTCCGAAAAAG
ATGGTTTGAAAATCTTGGACGGTATCCAAATGAAGACGATGTCAAGAGAA
TGTTCGATAATTTCATCCCAATGCAAGTAAGTTTTGTTTGTCTAAATTTC
ACAGGTTCTGCTATATAAATGCTCTTAACATCTTTCGCACGCAACCTGGT
ACGCAACAACCGCTGTCTGGCTGCAGCCATCACTTCAAGGAACTCTTCCA
CCGTACACCATGACAATAAAGCAAAAAATGAAAAACTGATTGGAACAGAT
AAAATGGTTAAACAGATGGAACGCATTGATGGGAGAATTTTATCTAACTG
CAGGTCTGAATATCGTGTCAAGCATCACTACCAAGGCAAGGTCAAAGGTG
TTGTCTTAGACTGGGCTGGTACAGTGCTTGATTGCGGTGTTTACTCTCCT
GCCATCGTTTTTATGGAAGTTTTCAAACAAGAAGGTGTCCCTGTAACAAT
AGAGGAAGCACGCGAACCCATGGGTACGCATAAAATGGTGCATATTCGCC
GCGTCACACAAAACGAAAGTGTCCGAAAAAGATGGTTTGAAAATCTTGGA
CGGTATCCAAATGAAGACGATGTCAAGAGAATGTTCGATAATTTCATCCC
AATGCAAGTAAGTTTTGTTTGTCTAAATTTCACAGGTTCTGCTATATAAA
TGCTCTTAACATCTTTCGCACGCAACCTGGTACGCAACAACCGCTGTCTG
GCTGCAGCCATCACTTCAAGGAACTCTTCCACCGTACACCATGACAATAA
AGCAAAAAATGAAAAACTGATTGGAACAGATAAAATGGTTAAACAGATGG
AACGCATTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021039XLOC_021039Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035834-proteinTCONS_00035834-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035834-exon-sc0001373-1575043694:6834..6861TCONS_00035834-exon-sc0001373-1575043694:6834..6861Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1575043694:6294..6731TCONS_00035834-exon-sc0001373-1575043694:6294..6731Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1575043694:5623..6062TCONS_00035834-exon-sc0001373-1575043694:5623..6062Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1510915933:6834..6861TCONS_00035834-exon-sc0001373-1510915933:6834..6861Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1510915933:6294..6731TCONS_00035834-exon-sc0001373-1510915933:6294..6731Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1510915933:5623..6062TCONS_00035834-exon-sc0001373-1510915933:5623..6062Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1491911889:6834..6861TCONS_00035834-exon-sc0001373-1491911889:6834..6861Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1491911889:6294..6731TCONS_00035834-exon-sc0001373-1491911889:6294..6731Clytia hemisphaericaexon
TCONS_00035834-exon-sc0001373-1491911889:5623..6062TCONS_00035834-exon-sc0001373-1491911889:5623..6062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001373supercontigsc0001373:5623..6861 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.559907	0.595634	0.633955	0.507458	0.549139	0.271211	18.4543	19.1146	48.2117	28.7433	84.2124	95.3255	186.425	200.565	181.367	201.365	45.471	61.8415	164.49	168.163	81.7438	81.5919	49.8409	55.553	44.0477	28.1424	13.7496	30.9121	102.766	96.7587
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023198PGP_dom2
IPR023214HAD-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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