TCONS_00035829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035829
Unique NameTCONS_00035829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035829 ID=TCONS_00035829|Name=TCONS_00035829|organism=Clytia hemisphaerica|type=transcript|length=699bp
AGAAATGAAATGAGGATTTCATGTTCACCTTCTGAATGGCTTCATCACCA
CACACTACATCTTATGTCTCATACCAACAACATGTTATTCAATCATTACA
TAACAAAGAAACACACTTCACCAAACATAACATAGAGAAAGCATTGGGTA
ATGTTGGACATAAAGACATTGAAGTTGCTGAAAAATGGCTACAATCACAC
AGGCTCGATACAACCCTAGATACAGAATCTGAAAGAgaattcattttgtt
tttatgtCCAACTGGACCGTTCTTGAGTGAGGTATCGAAGTTTTACGAAG
AATCCTACAGTCGTTGTGGTAGCAATTCAGCGCATAATTTGTTTCCACAC
GTCACATTATCATCTTTCTTCAAGGTTTCAGATTCAGCCTTACCTTACGT
GTTAGACATTCTAGCGAATTGTATCGAGAATACGACCGCTCAGAAACCCG
ATCGAATACGATTAAGTTTACAATCGTGTGAAGGGTTTATTGGTATCTTT
CTTTCGGAGGAGTCGTCGATTTGGTTGCAAGAAATTCTTGATGAATTTGT
GAGAAGAACGGATGCTGATTTAGGTGTTAGAGTGAAACCACAGACAACTC
AATTCCACTTAACATTAGCTTACAACTTTGACCTTTCCAAAACCGACGAT
CTGAGTACTTTGGCCAAAAACATCAAACTTGACGCACCAGTCCGATggt
Run BLAST on NCBI

protein sequence of TCONS_00035829-protein

>TCONS_00035829-protein ID=TCONS_00035829-protein|Name=TCONS_00035829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MASSPHTTSYVSYQQHVIQSLHNKETHFTKHNIEKALGNVGHKDIEVAEK
WLQSHRLDTTLDTESEREFILFLCPTGPFLSEVSKFYEESYSRCGSNSAH
NLFPHVTLSSFFKVSDSALPYVLDILANCIENTTAQKPDRIRLSLQSCEG
FIGIFLSEESSIWLQEILDEFVRRTDADLGVRVKPQTTQFHLTLAYNFDL
SKTDDLSTLAKNIKLDAPVRW
Run BLAST on NCBI

transcript from alignment at sc0001371:20763..27336+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035829 ID=TCONS_00035829|Name=TCONS_00035829|organism=Clytia hemisphaerica|type=transcript|length=6574bp|location=Sequence derived from alignment at sc0001371:20763..27336+ (Clytia hemisphaerica)
AGAAATGAAATGAGGATTTCATGTTCACCTTCTGAATGGCTTCATCACCA
CACACTACATCTTATGTCTCATACCAACAACATGTTATTCAATCATTACA
TAACAAAGAAACACACTTCACCAAACATAACATGTAATACTTTCCCACAG
ATATCTTTTATAacacactagatagagctactctgccCCTGGTGAAGCAA
GTTAATGTGCCGTCTTTATAATTCGGTGCTGGCATTTTTACCGCTCAAGA
CTGCTCAAGACCACTCTCTCGCCTGCGCTTTTTTAGAGGGTGGCGCTTTC
TTCAAATTTATTAGTATCATTTTCCAgaaatttgtgtgttttagcAAAAT
ACATTAATTTTACTATTATACGATTTGCGTTTTTCTTGCAGGGAGGCCTG
GCAGGGAAGTGCCCTTTCTGATCTCTAATTTCAGGCGCAGCGCACTTCAA
CGGACTCTAAATAGAGGAAAGATAGTCTACTTACTCATTGATTAATCCGT
TTGCTTTTCTTTTACAGAGAGAAAGCATTGGGTAATGTTGGACATAAAGA
CATTGAAGTTGCTGAAAAATGGTGAGTAGTCTGAATAGTATAAACTAATA
CCACATGAAAGTGTCTACTTCGCATCTattgcttcattttcaaaacaaag
ttaaaacgcatgcgtgtttaaaaaatgttaataGTTATTATCCGCAAATC
ATTTAAAGGAATGAATacgtaggggtggtacagtttttttggtcggggtt
gtggattgtgaaatttgtcgttctttttgaaatttgacattcTTTTTTAA
TGTTGCGAAGTAGACCCTCACGGGACTATGGTTTTATGAGAAGGTGCTGA
TTTTATGGGAatgaaatcattaaaaaatttataaCTCAATCTTTATCATG
AAGATTTTGTGCTAAAAACCTCATGGAAACTAAAACAGTATGTAATAAAA
ATGTGACCGCCCTAAAACTGTTCTTTTCTCCACGTGAGCTGAATTTCTTA
ACATGTTTAAACTTTGAAAGTACAACCTTTTCTTGAGAGTGTCACAACAA
GATGTTGATTTGACCAATCTCGTATGACTTTGGATTTGGAACACTGAATT
TAATCTAATGGTAATCTGGATATTGACATCGACGTAaattttgaagatct
ttcatCCATTAATGGAATAGAGTTTGACCACCAATTGGGTTCAACTGGCA
TATTTGgactttcaatttttgattttgtcttTCAAGctaaatttactttt
tctttaaaagttgACTATATTTGCCAGAATCTCATCGATACAATATTTAC
TTATCTGTCGTTTAGctgttttaatttttacatCTAAAAATAGAATTACT
CATAAAGCTGTCCTACATCTCAATGTAGCCTACACAAATTTTTCTTCCTT
GGAATTTTCATACTATTACGTTCATAAGAAACCTAAAATGATCAAAGTTT
TAGTTGGTTTCCAACGCGACCCCTGGTGACAAGTTTTAGACGATTTATTT
GTCATTATAAGAATCATCGTATGTTAGAGCCTAAAGATTTACTGATTGTA
TAACATTCAATGACCAAGCTCTATGCATCGCACTGACCTCTTGTACCAAT
TACTTCTAAATTAGCTTAGAGATCTTGTCGATAGTTAAGAGGACTGATAA
GATATAATTTTTCcactccatctatatctttctATATCAACCAATGGATC
AACTTAAAACACTGACGCTCGTCACATCATGACTTTTGAGATAAAGtcga
ctctctctctctctattgCGGTCTTCTGAAGTACCAAAGATTATTTTCGA
ATTAGAAAAAGAGTCAGATCAGGGGCCgcggctccactttgaaagtgatG
GGGTCATGATATActgactaaggaggcgccactATGGTTGACGCCCAAAA
CAGGtcctttttactttgaaaaaatgtggtcgggCCAANTACTTTGAAGG
TGATGGGGCCATGATATACTGACGAAGGAGGCGCCAACGggcaaaatctt
ttgaattttaacCCTTCTAGATTGCCTAAAACAGGTCTGTTTTAAGGTTA
TTAAACAAAATTTGGCTTGattagtaaattttctttttactttgaaaaaa
tgtggtcgggGCCCAAGGCCCGGGTGCCCCTCCCCCCGGTGTCGCGGCCT
CTGCAGATTACGGAGAGTATTTTAGGCGACTTATCAACTGAACGAACGGA
TTTTTTAGTCcgaattacagaaatatttCAATAACAGAAGTTCAAGTTAA
ACAGAGTTGACTGAGTTGAaatgtgtgcttataaaaagattGTTTCGACC
GTTACATACCACACACAAATTGAATGCTGTTTTAATGAGATAAACAATTA
TATGTCCCAGTGTAACATCTATATGTATTcatacaaaaaatgtttttttc
tctatttttgatTCGATGGCATGAGGAAATTAAGGTATTCCATTGCAGTG
AGTGAACATAGCAGGTTATTCATTCGTGCTTGACCACTACATTTCTTTTC
TGTCTGTTTTGAATTAAACCTgacaatttttctttattcaagTACAAAGG
TGTACTAGTCTCTGGACTGtgtttagatttttcattttgatgtttctgTT
TGACGGCCTTGTTTGCTTATAATGCTCGAATGTAACATCCAGAAGCAATG
CTTGCGTACTTGCCAACTCAATGATTTGGCACAGCTAAGAATTAGTCGAC
CTTTGGTTTTCTGCAAACAGGCTCTACAACAGACTCTTCCGTCTTGCTTG
AAGCCACTCTAAAATTAAGGTGTGGTAATGAGATGTCGTCTGGTACTGAC
TTTACTGTCTTTTTTTCCGTTGAGATTTTTTCCGCTAAAAAAGTTTATCT
TTCCTTCGATGTAACTTCAAGAGCTTCAAATTTATGATAATGCTTATACA
TTTAAATCTCGATAAGTAGTACTATGGATAGACAATACGCGGCTAAGTTT
TATACGctcttttttattaaaaccaGTAGATTTTTggtgaggctcggctg
ttcttatttatttttagcattttgagcCTCAAACTGTTGTTATACTGTTC
GTATTTTAAATGGGTgcaattgaggtattTTAGACTTGATACCCAATTTT
CACTACTTTGACTCCTAAATTGCTCGCTCAGGCTCAGCATTTTCttcaat
tgttcttatttttttggtaattttgagcctcgttcttcttataaaataaa
aagagtGTAGTACCATTTTCCACCGGTAATGCAATAATGATGATGGTATT
TGTAACCAAATCTATTTCATCGATAGTTTCAATTCGTTTTGGTGGTTGTC
AacaaaagaaagttaaaaaaaaagcttGATGAAAAACGTTGAACGTCTCG
TGTTGTGTCATTCCTATGAAAAATTAatctaaaaaaaagatttattttat
cTCTTGTTTTGATCTCGTTATAATGGTAAGTCAATCTGTAAAACAAATCT
CTCTTTCTCGATTCATTGATTAGTTAGTtgattaaaaagacaaaatagga
GACGATATTAAGCTGCATTTCACATGAGAAGAATGTTTTGGTATGTTTGT
CTCTATAAGCTGATTACTTAGATGGATGGATTGATAGAGGGATGGATAGA
TTGGGTCGTTTTCTTGGTAGGGTAAAGTTCGCTTTGAGTATGAGAGCATC
TTTTCGGTATGCTATTGCTGGATATTTGATAATGAGCCAATTAAATTTTA
GATTGAGAAAATAAAAGGTATTAGGATGTGGGTTTGAATCtcagtttgaa
tttttgatcattttattttcaCCCTACTTGAATTGGCCATAGGAGAAAAT
TGTTCGGAAAGTATAAAGTTAGTCGACTTACCCCTAGACTAGAGTTTACT
TACTTATTCTACTCCAAATATGGATTGGATCTAATAGTATGGATTTGCTA
CCATCTctagcaaagccaaaaaataGAGACTGCCAAACTACGCCGgacca
cttatcagcgccatccagtctatcaaaaagctataagtggccCCCAGGCT
AACTTACCCCCAACTTTTTGAGAAAGGTTTTTGCTGTTTCAGACTGCAAA
ACTGTTTGATAATATCTGAATAATACGAGTTTGTCCCATTAACAAATATT
TGCTTAATAATGAGtttgttaaagttttttttcctgGACTAAAGACTAAA
TTCTTACAAAATGTAGCTTGCATAGCTCCCTCTCGTTATCTTCTATAATC
TTATTAAAATTATCttcattttggtatcaatagtactttttgatacacct
ttttgaTACATCGGTTTTCTCCGTTCATCGTTTGCTAGGTTGTTTCAAAG
TCGATAAGAATCATGGGAAATCCTGATAACTTTTTTCTGTTGGtctaaaa
ttttggattttttgcgTCTAACAAACGGGAAACCGTTATGGGGGCGCAAT
CAGTCTAGATTATCCATGATtaatttcgactgtgaaatggtttACTGtat
ctttcaaaatttaatctcgAGCTAGTTCGCTTCGCTGAATTCATTAATTT
AAGCAACTTCCAGTGAAATttctaagaacaatttaagtCGGATTTAGGGA
AAATGTTGAGGGCCCTAAACCTACCTCTATctctgaaaacttttaaaagg
gAGGGggagttttttttcagaaaatgggaAAAGGGTGGGCAAAatcgttt
tcaaaattctaGGAGGGGCAATCAAAAAGGGGGGGGGGCAGAGgggtttt
ttcaattttcataggAGGGGAACCAAACTACTAGGACACTATGTGCATCA
TGGAAAGTCGAATTCctcaaaaaaaacaaccaaactaTTTAAGAATTTCT
CTTTATCGTTTAAGGCTACAATCACACAGGCTCGATACAACCCTAGATAC
AGAATCTGAAAGAgaattcattttgtttttatgtCCAACTGGACCGTTCT
TGAGTGAGGTATCGAAGTTTTACGAAGAATCCTACAGTCGTTGTGGTAGC
AATTCAGCGCATAATTTGTTTCCACACGTCACATTATCATCTTTCTTCAA
GGTAATGCGAACTATTTGTTATTGTAAAAATATAATTCTCGTATAATAGT
GAGCGACCACTGTCGAGAGTGAACTGATGGCCCCCTTTTTGAAAGATAAG
TAAAAGGTACaactacttttgaaaaaatgttgtcaCGCCCTCCAGGAGGG
GTACTACGGGGGTTGGACAATGTCGGTTATGTGCGAATCTCAGAAAACCG
ACCTGAGAAAATTTCGGAACCTTGAAgaagatttttttgacttttcatgC
TTTTCATACTTTTTGTAAGGccaaaaaaaagaggaaattcCGATGTTTTG
TAACTCTTAGAGAGACTTAAGAGGAAAcaaacctatttttgcctaagtac
ccccatCGGACACGCCCTCTATAAGGTGGAGAAGAAAATGATGTTTATGA
TCTTATGATCTTATGTAGTTCTTTGACTGAAAATGTCTCAAAATGTCTTT
TTTAGGTTTCAGATTCAGCCTTACCTTACGTGTTAGACATTCTAGCGAAT
TGTATCGAGAATACGACCGCTCAGAAACCCGATCGAATACGATTAAGTTT
ACAATCGTGTGAAGGGTTTATTGGTATCTTTCTTTCGGAGGAGTCGTCGA
TTTGGTTGCAAGAAATTCTTGATGAATTTGTGAGAAGAACGGATGCTGAT
TTAGGTAGTAGCACCGACCACTATTATTAAAACCCCTGGATTAAACtggc
tattccagaaaataaATTACCCCCTACCCTCTTTCCAGGAGGTAATTTTT
AGAAGGTCAAccccccccctggatttttCGCAGAACTTCTAGAATCCTTC
CCTggatttttcatgaaatttcacTGACCCCTCCATCTAggtttttaaag
tattttgagGGTTACGACTTCATCAGCTAGGAGGTAAATTTCTCTTCTGG
GAAGGCTATTATCTTTGCTCGTTGATTATTTAAATTCTAAACGCTCTGGA
TAACTTTTGGTCGACCGGTATTAAAAAACTGTCTTCAGGGTTATATAAAT
TCTAGTGGGTAGGAGCCACTTCTATCGGGTAGGAGCCACTTCTATCTCTT
TTTGTATTAGCTTATTAATTGTCAAAAATACCTTTCTTCTAAGAGGAAGC
TGTGAAAAAATCCACTATGTCACTATAAGTTTTCGAGAACGGAGCGTCTG
TACTGAACCTTGCAGAGAAGAAACTTTTTATATTGATTGACCATAAGTCG
AGTCTTCTATAAAGTCTAGCCCAGAACAAGCCGAAAACCAGTATTGATAG
TTTCCTTTGTACAAAATGTCTATACTGGATCAATAAAATTAAATAACAAA
TGTAATAATTTTTGCTATAAATCTTATGCCACCCTTCAAGAAGTCCTTTA
TAAATTACGTCAAGTGAATCATTAGGAAAGGCCTTCAATACACTAAATTG
ATTTGAAACTACTTCTaaactaaaatataaaattcttcAACTTTTTAGGT
GTTAGAGTGAAACCACAGACAACTCAATTCCACTTAACATTAGCTTACAA
CTTTGACCTTTCCAAAACCGACGATCTGAGTACTTTGGCCAAAAACATCA
AACTTGACGCACCAGTCCGATggt

Coding sequence (CDS) from alignment at sc0001371:20763..27336+

>TCONS_00035829 ID=TCONS_00035829|Name=TCONS_00035829|organism=Clytia hemisphaerica|type=CDS|length=3315bp|location=Sequence derived from alignment at sc0001371:20763..27336+ (Clytia hemisphaerica)
ATGGCTTCATCACCACACACTACATCTTATGTCTCATACCAACAACATGT
TATTCAATCATTACATAACAAAGAAACACACTTCACCAAACATAACATAG
AGAAAGCATTGGGTAATGTTGGACATAAAGACATTGAAGTTGCTGAAAAA
TGGCTACAATCACACAGGCTCGATACAACCCTAGATACAGAATCTGAAAG
AgaattcattttgtttttatgtCCAACTGGACCGTTCTTGAGTGAGGTAT
CGAAGTTTTACGAAGAATCCTACAGTCGTTGTGGTAGCAATTCAGCGCAT
AATTTGTTTCCACACGTCACATTATCATCTTTCTTCAAGGTTTCAGATTC
AGCCTTACCTTACGTGTTAGACATTCTAGCGAATTGTATCGAGAATACGA
CCGCTCAGAAACCCGATCGAATACGATTAAGTTTACAATCGTGTGAAGGG
TTTATTGGTATCTTTCTTTCGGAGGAGTCGTCGATTTGGTTGCAAGAAAT
TCTTGATGAATTTGTGAGAAGAACGGATGCTGATTTAGGTGTTAGAGTGA
AACCACAGACAACTCAATTCCACTTAACATTAGCTTACAACTTTGACCTT
TCCAAAACCGACGATCTGAGTACTTTGGCCAAAAACATCAAACTTGACGC
ACCAGTCCGATggATGGCTTCATCACCACACACTACATCTTATGTCTCAT
ACCAACAACATGTTATTCAATCATTACATAACAAAGAAACACACTTCACC
AAACATAACATAGAGAAAGCATTGGGTAATGTTGGACATAAAGACATTGA
AGTTGCTGAAAAATGGCTACAATCACACAGGCTCGATACAACCCTAGATA
CAGAATCTGAAAGAgaattcattttgtttttatgtCCAACTGGACCGTTC
TTGAGTGAGGTATCGAAGTTTTACGAAGAATCCTACAGTCGTTGTGGTAG
CAATTCAGCGCATAATTTGTTTCCACACGTCACATTATCATCTTTCTTCA
AGGTTTCAGATTCAGCCTTACCTTACGTGTTAGACATTCTAGCGAATTGT
ATCGAGAATACGACCGCTCAGAAACCCGATCGAATACGATTAAGTTTACA
ATCGTGTGAAGGGTTTATTGGTATCTTTCTTTCGGAGGAGTCGTCGATTT
GGTTGCAAGAAATTCTTGATGAATTTGTGAGAAGAACGGATGCTGATTTA
GGTGTTAGAGTGAAACCACAGACAACTCAATTCCACTTAACATTAGCTTA
CAACTTTGACCTTTCCAAAACCGACGATCTGAGTACTTTGGCCAAAAACA
TCAAACTTGACGCACCAGTCCGATggATGGCTTCATCACCACACACTACA
TCTTATGTCTCATACCAACAACATGTTATTCAATCATTACATAACAAAGA
AACACACTTCACCAAACATAACATAGAGAAAGCATTGGGTAATGTTGGAC
ATAAAGACATTGAAGTTGCTGAAAAATGGCTACAATCACACAGGCTCGAT
ACAACCCTAGATACAGAATCTGAAAGAgaattcattttgtttttatgtCC
AACTGGACCGTTCTTGAGTGAGGTATCGAAGTTTTACGAAGAATCCTACA
GTCGTTGTGGTAGCAATTCAGCGCATAATTTGTTTCCACACGTCACATTA
TCATCTTTCTTCAAGGTTTCAGATTCAGCCTTACCTTACGTGTTAGACAT
TCTAGCGAATTGTATCGAGAATACGACCGCTCAGAAACCCGATCGAATAC
GATTAAGTTTACAATCGTGTGAAGGGTTTATTGGTATCTTTCTTTCGGAG
GAGTCGTCGATTTGGTTGCAAGAAATTCTTGATGAATTTGTGAGAAGAAC
GGATGCTGATTTAGGTGTTAGAGTGAAACCACAGACAACTCAATTCCACT
TAACATTAGCTTACAACTTTGACCTTTCCAAAACCGACGATCTGAGTACT
TTGGCCAAAAACATCAAACTTGACGCACCAGTCCGATggATGGCTTCATC
ACCACACACTACATCTTATGTCTCATACCAACAACATGTTATTCAATCAT
TACATAACAAAGAAACACACTTCACCAAACATAACATAGAGAAAGCATTG
GGTAATGTTGGACATAAAGACATTGAAGTTGCTGAAAAATGGCTACAATC
ACACAGGCTCGATACAACCCTAGATACAGAATCTGAAAGAgaattcattt
tgtttttatgtCCAACTGGACCGTTCTTGAGTGAGGTATCGAAGTTTTAC
GAAGAATCCTACAGTCGTTGTGGTAGCAATTCAGCGCATAATTTGTTTCC
ACACGTCACATTATCATCTTTCTTCAAGGTTTCAGATTCAGCCTTACCTT
ACGTGTTAGACATTCTAGCGAATTGTATCGAGAATACGACCGCTCAGAAA
CCCGATCGAATACGATTAAGTTTACAATCGTGTGAAGGGTTTATTGGTAT
CTTTCTTTCGGAGGAGTCGTCGATTTGGTTGCAAGAAATTCTTGATGAAT
TTGTGAGAAGAACGGATGCTGATTTAGGTGTTAGAGTGAAACCACAGACA
ACTCAATTCCACTTAACATTAGCTTACAACTTTGACCTTTCCAAAACCGA
CGATCTGAGTACTTTGGCCAAAAACATCAAACTTGACGCACCAGTCCGAT
ggATGGCTTCATCACCACACACTACATCTTATGTCTCATACCAACAACAT
GTTATTCAATCATTACATAACAAAGAAACACACTTCACCAAACATAACAT
AGAGAAAGCATTGGGTAATGTTGGACATAAAGACATTGAAGTTGCTGAAA
AATGGCTACAATCACACAGGCTCGATACAACCCTAGATACAGAATCTGAA
AGAgaattcattttgtttttatgtCCAACTGGACCGTTCTTGAGTGAGGT
ATCGAAGTTTTACGAAGAATCCTACAGTCGTTGTGGTAGCAATTCAGCGC
ATAATTTGTTTCCACACGTCACATTATCATCTTTCTTCAAGGTTTCAGAT
TCAGCCTTACCTTACGTGTTAGACATTCTAGCGAATTGTATCGAGAATAC
GACCGCTCAGAAACCCGATCGAATACGATTAAGTTTACAATCGTGTGAAG
GGTTTATTGGTATCTTTCTTTCGGAGGAGTCGTCGATTTGGTTGCAAGAA
ATTCTTGATGAATTTGTGAGAAGAACGGATGCTGATTTAGGTGTTAGAGT
GAAACCACAGACAACTCAATTCCACTTAACATTAGCTTACAACTTTGACC
TTTCCAAAACCGACGATCTGAGTACTTTGGCCAAAAACATCAAACTTGAC
GCACCAGTCCGATgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021035XLOC_021035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035829-exon-sc0001371-1491911889:20763..20895TCONS_00035829-exon-sc0001371-1491911889:20763..20895Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1510915933:20763..20895TCONS_00035829-exon-sc0001371-1510915933:20763..20895Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1575043694:20763..20895TCONS_00035829-exon-sc0001371-1575043694:20763..20895Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1491911889:21280..21333TCONS_00035829-exon-sc0001371-1491911889:21280..21333Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1510915933:21280..21333TCONS_00035829-exon-sc0001371-1510915933:21280..21333Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1575043694:21280..21333TCONS_00035829-exon-sc0001371-1575043694:21280..21333Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1491911889:25577..25763TCONS_00035829-exon-sc0001371-1491911889:25577..25763Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1510915933:25577..25763TCONS_00035829-exon-sc0001371-1510915933:25577..25763Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1575043694:25577..25763TCONS_00035829-exon-sc0001371-1575043694:25577..25763Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1491911889:26218..26416TCONS_00035829-exon-sc0001371-1491911889:26218..26416Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1510915933:26218..26416TCONS_00035829-exon-sc0001371-1510915933:26218..26416Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1575043694:26218..26416TCONS_00035829-exon-sc0001371-1575043694:26218..26416Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1491911889:27211..27336TCONS_00035829-exon-sc0001371-1491911889:27211..27336Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1510915933:27211..27336TCONS_00035829-exon-sc0001371-1510915933:27211..27336Clytia hemisphaericaexon
TCONS_00035829-exon-sc0001371-1575043694:27211..27336TCONS_00035829-exon-sc0001371-1575043694:27211..27336Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035829-proteinTCONS_00035829-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001371supercontigsc0001371:20763..27336 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.381898	1.50932	0.215337	0.495309	3.74004	4.75387	2.37862	2.08037	2.38346	1.80111	1.67208	1.60539	3.01948	2.20641	0.778237	1.2011	3.53926e-05	2.19291	2.02544	2.60547	1.78712	2.0669	1.91796	2.35391	3.49304	4.63402	1.1401	0.568073	1.48873	1.37651
Blast
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BLAST of TCONS_00035829 vs. Swiss-Prot (Human)
Match: UBS3B (Ubiquitin-associated and SH3 domain-containing protein B OS=Homo sapiens GN=UBASH3B PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.788e-32
Identity = 67/194 (34.54%), Postives = 103/194 (53.09%), Query Frame = 3 
Query:  117 FTKHNIEKALGNVGHKDIEVAEKWLQSHRLDTTLDTESEREFILFLCPTGPFLSEVSKFYEESYSRCGSNSAHNLFPHVTLSSFFKVSDSALPYVLDILANCIENTTAQKPDRIRLSLQSCEGFIGIFLSEESSIWLQEILDEFVRRTDADLGVRVKPQTTQFHLTLAYNFDLSKTDDLSTLAKNIKLDAPVRW 698
            F +   +KAL + G + ++ A  WL SH  D  LD    RE++L+L PTGP   ++S F+++S   CG N AHN+FPH+TL  FF   DS +  + + L   +     +    + L L +   FIG+F+ E+S+  L++   +F     +   V V+P   Q H+TLAY+F  S    L  LA+NI +     W
Sbjct:   49 FPRARAQKALASTGGRSVQAACDWLFSHVGDPFLDDPLPREYVLYLRPTGPLAQKLSDFWQQSKQICGKNKAHNIFPHITLCQFFMCEDSKVDALGEALQTTVSRWKCKFSAPLPLELYTSSNFIGLFVKEDSAEVLKKFAADFAAEAASKTEVHVEPHKKQLHVTLAYHFQASHLPTLEKLAQNIDVKLGCDW 242
The following BLAST results are available for this feature:
BLAST of TCONS_00035829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBS3B1.788e-3234.54Ubiquitin-associated and SH3 domain-containing pro... [more]
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