TCONS_00035828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035828
Unique NameTCONS_00035828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035828 ID=TCONS_00035828|Name=TCONS_00035828|organism=Clytia hemisphaerica|type=transcript|length=769bp
ATCATATTTTTTTGCACGTAGATCAATTTTGAGTTACCAATTAACTAAAT
GGTCATGATTAGAACTTGGGATTTTGGAGTAATTAGGAGAAAAGGTAACT
TTTTTAAGCACTTTCCTAATGCCTTTTCCTAATATCAGTCCACAGTGGGA
TTGAATTGTTTGCAAGTTTTATGACTACGCAAATGACAATAATTATAATA
CACATCCTGAATTTAAAACCAGTACAGAGTCAAATTTCTTAGCAGTCAGC
ATGAAAGATGGTGTGGAAAATGCAGACCTTGATTGACTGCAATAATCTTG
AGGgtcattttgtttgtatatgtaatttttttatgaatttcagAATTCAT
AAAAACAAGAATCCATTAGCATTAATTTTCAAGCCAGTACATAAATAATG
TCTTCTGCAACCTCATCCTTGAAGCATGACCTTTGATGTGTGTGTACCCT
TCATGTGTATCCTGTTAACCTCGAGCTATCAGTCCTTaggttgtttaaaa
aaataatgtcCAATGTTCAGCCAagccaaaaccaaaacaaagccaAGTGA
GCAAAACGTCTTGGTTGTGTTCAATTATATACTGCTCATTTTATTCATAG
CATTTTTCTTGAAACTGATAGAATTCCAGATAAAAAATCCAACATAATAT
CTACCTTCTATGTTCTGAAAACATTTGTGTGCACAtagttgttaaaagca
aactaacttttttaaatgatcaattaggtccataagatcacaaaaacgag
tggtgagaaaaattttgac
Run BLAST on NCBI

transcript from alignment at sc0001370:63093..63861

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035828 ID=TCONS_00035828|Name=TCONS_00035828|organism=Clytia hemisphaerica|type=transcript|length=769bp|location=Sequence derived from alignment at sc0001370:63093..63861 (Clytia hemisphaerica)
gtcaaaatttttctcaccactcgtttttgtgatcttatggacctaattga
tcatttaaaaaagttagtttgcttttaacaactaTGTGCACACAAATGTT
TTCAGAACATAGAAGGTAGATATTATGTTGGATTTTTTATCTGGAATTCT
ATCAGTTTCAAGAAAAATGCTATGAATAAAATGAGCAGTATATAATTGAA
CACAACCAAGACGTTTTGCTCACTtggctttgttttggttttggctTGGC
TGAACATTGgacattatttttttaaacaacctAAGGACTGATAGCTCGAG
GTTAACAGGATACACATGAAGGGTACACACACATCAAAGGTCATGCTTCA
AGGATGAGGTTGCAGAAGACATTATTTATGTACTGGCTTGAAAATTAATG
CTAATGGATTCTTGTTTTTATGAATTctgaaattcataaaaaaattacat
atacaaacaaaatgacCCTCAAGATTATTGCAGTCAATCAAGGTCTGCAT
TTTCCACACCATCTTTCATGCTGACTGCTAAGAAATTTGACTCTGTACTG
GTTTTAAATTCAGGATGTGTATTATAATTATTGTCATTTGCGTAGTCATA
AAACTTGCAAACAATTCAATCCCACTGTGGACTGATATTAGGAAAAGGCA
TTAGGAAAGTGCTTAAAAAAGTTACCTTTTCTCCTAATTACTCCAAAATC
CCAAGTTCTAATCATGACCATTTAGTTAATTGGTAACTCAAAATTGATCT
ACGTGCAAAAAAATATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021034XLOC_021034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035828-exon-sc0001370-1491911889:63093..63861TCONS_00035828-exon-sc0001370-1491911889:63093..63861Clytia hemisphaericaexon
TCONS_00035828-exon-sc0001370-1510915933:63093..63861TCONS_00035828-exon-sc0001370-1510915933:63093..63861Clytia hemisphaericaexon
TCONS_00035828-exon-sc0001370-1575043694:63093..63861TCONS_00035828-exon-sc0001370-1575043694:63093..63861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001370supercontigsc0001370:63093..63861 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.615499	0.683504	1.05409	0.743703	0.17825	0.433537	0.741518	0.545637	0.178895	0.141572	0.14186	0.590596	0.309815	0	0.170208	0.141217	0.121404	0.0538842	0.46361	0.245811	0.328911	0.51068	0.0809808	0.506418	0.227938	0.270706	0.298463	0.464562	0.73196	0.593459
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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