|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035820 ID=TCONS_00035820|Name=TCONS_00035820|organism=Clytia hemisphaerica|type=transcript|length=816bp
ttccttgaaaaatcgtctgaTACTCTAAAATCATCGTCTTTATTTAGTTT
GTGGGCTGATGCAAGTATTCTAATCCTTTCTTCTTCACTCTTGAGAATAA
CTTTTAATGGTCTCCATCGTTCATTTGTATACATTTCATCTTTACGAGCA
CCTATGCGTTCTACCTTGATTATCGTCACATCGAAACCCATTTGTGCTTT
CAGTATTCTTTCTATAAAATCTTTGTCGCCAACTCGTTGCTGTTCTTCGT
TTTCGTGCTTATTTTCACCTAAATCATGCACCATGATGTTGCACTTGGTT
GATTTGAGCCAACGCTCCTCTTCGTTCACTgatttgatgaaactttttaT
GGTCCCCTCTTGTTTTTGTAGATCATCTTTGGTGACTTCtgtatatgatt
gtttttttgtttctgtgtTGTTGAGCTGTGTTTCAGATCGTTTGTTGTAC
CGTTCTTTGTTGACGTCTTTTTTATCCATTAGCTTCTTGACTTTCCTTTC
TAGAGAGGTTATTCTCTCGTTGAAACCTAATTTTGATCCTTGATGTTCAT
CTTTATCTGCTTCTTTTGTTGTGATGTGACTGCGAGCTTTTTGTCTACTT
GTTTTAATCCTCTCAAGTAAGAGTGGCGTTATTTTAACACAATTTACACA
TTCAAAGCGCCGGCTTTTATATTGCAGACAAAGCTGAATCTGATAAGCCG
GGAGCTCAGAGCAGGCATAATGGACAAGTCTATCACATCTCCTACATTGT
AAGGTGTCGTTATCTGCTATGATGGTGTTTGTTAAACAGTTATTGGGTGT
GCAATATCCATAATTT Run BLAST on NCBI protein sequence of TCONS_00035820-protein >TCONS_00035820-protein ID=TCONS_00035820-protein|Name=TCONS_00035820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
NYGYCTPNNCLTNTIIADNDTLQCRRCDRLVHYACSELPAYQIQLCLQYK
SRRFECVNCVKITPLLLERIKTSRQKARSHITTKEADKDEHQGSKLGFNE
RITSLERKVKKLMDKKDVNKERYNKRSETQLNNTETKKQSYTEVTKDDLQ
KQEGTIKSFIKSVNEEERWLKSTKCNIMVHDLGENKHENEEQQRVGDKDF
IERILKAQMGFDVTIIKVERIGARKDEMYTNERWRPLKVILKSEEERIRI
LASAHKLNKDDDFRVSDDFSR Run BLAST on NCBI transcript from alignment at sc0001367:53901..54716 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035820 ID=TCONS_00035820|Name=TCONS_00035820|organism=Clytia hemisphaerica|type=transcript|length=816bp|location=Sequence derived from alignment at sc0001367:53901..54716 (Clytia hemisphaerica)
AAATTATGGATATTGCACACCCAATAACTGTTTAACAAACACCATCATAG
CAGATAACGACACCTTACAATGTAGGAGATGTGATAGACTTGTCCATTAT
GCCTGCTCTGAGCTCCCGGCTTATCAGATTCAGCTTTGTCTGCAATATAA
AAGCCGGCGCTTTGAATGTGTAAATTGTGTTAAAATAACGCCACTCTTAC
TTGAGAGGATTAAAACAAGTAGACAAAAAGCTCGCAGTCACATCACAACA
AAAGAAGCAGATAAAGATGAACATCAAGGATCAAAATTAGGTTTCAACGA
GAGAATAACCTCTCTAGAAAGGAAAGTCAAGAAGCTAATGGATAAAAAAG
ACGTCAACAAAGAACGGTACAACAAACGATCTGAAACACAGCTCAACAac
acagaaacaaaaaaacaatcatatacaGAAGTCACCAAAGATGATCTACA
AAAACAAGAGGGGACCAtaaaaagtttcatcaaatcAGTGAACGAAGAGG
AGCGTTGGCTCAAATCAACCAAGTGCAACATCATGGTGCATGATTTAGGT
GAAAATAAGCACGAAAACGAAGAACAGCAACGAGTTGGCGACAAAGATTT
TATAGAAAGAATACTGAAAGCACAAATGGGTTTCGATGTGACGATAATCA
AGGTAGAACGCATAGGTGCTCGTAAAGATGAAATGTATACAAATGAACGA
TGGAGACCATTAAAAGTTATTCTCAAGAGTGAAGAAGAAAGGATTAGAAT
ACTTGCATCAGCCCACAAACTAAATAAAGACGATGATTTTAGAGTAtcag
acgatttttcaaggaa Coding sequence (CDS) from alignment at sc0001367:53901..54716 >TCONS_00035820 ID=TCONS_00035820|Name=TCONS_00035820|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0001367:53901..54716 (Clytia hemisphaerica)
AATTATGGATATTGCACACCCAATAACTGTTTAACAAACACCATCATAGC
AGATAACGACACCTTACAATGTAGGAGATGTGATAGACTTGTCCATTATG
CCTGCTCTGAGCTCCCGGCTTATCAGATTCAGCTTTGTCTGCAATATAAA
AGCCGGCGCTTTGAATGTGTAAATTGTGTTAAAATAACGCCACTCTTACT
TGAGAGGATTAAAACAAGTAGACAAAAAGCTCGCAGTCACATCACAACAA
AAGAAGCAGATAAAGATGAACATCAAGGATCAAAATTAGGTTTCAACGAG
AGAATAACCTCTCTAGAAAGGAAAGTCAAGAAGCTAATGGATAAAAAAGA
CGTCAACAAAGAACGGTACAACAAACGATCTGAAACACAGCTCAACAaca
cagaaacaaaaaaacaatcatatacaGAAGTCACCAAAGATGATCTACAA
AAACAAGAGGGGACCAtaaaaagtttcatcaaatcAGTGAACGAAGAGGA
GCGTTGGCTCAAATCAACCAAGTGCAACATCATGGTGCATGATTTAGGTG
AAAATAAGCACGAAAACGAAGAACAGCAACGAGTTGGCGACAAAGATTTT
ATAGAAAGAATACTGAAAGCACAAATGGGTTTCGATGTGACGATAATCAA
GGTAGAACGCATAGGTGCTCGTAAAGATGAAATGTATACAAATGAACGAT
GGAGACCATTAAAAGTTATTCTCAAGAGTGAAGAAGAAAGGATTAGAATA
CTTGCATCAGCCCACAAACTAAATAAAGACGATGATTTTAGAGTAtcaga
cgatttttcaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035820-exon-sc0001367-1491911889:53901..54716 | TCONS_00035820-exon-sc0001367-1491911889:53901..54716 | Clytia hemisphaerica | exon |
| TCONS_00035820-exon-sc0001367-1510915933:53901..54716 | TCONS_00035820-exon-sc0001367-1510915933:53901..54716 | Clytia hemisphaerica | exon |
| TCONS_00035820-exon-sc0001367-1575043694:53901..54716 | TCONS_00035820-exon-sc0001367-1575043694:53901..54716 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001367 | supercontig | sc0001367:53901..54716 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
|
