TCONS_00035818 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035818
Unique NameTCONS_00035818
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035818 ID=TCONS_00035818|Name=TCONS_00035818|organism=Clytia hemisphaerica|type=transcript|length=485bp
ACTACCAAGGAAAATTCAACTGGTAAATCGAAAAAGTATTTGGAACCAAG
AAGCTTTGAGTTATGCACTTTTATTAAAGAAAAACTTGTCTTGAACGTCC
AATTTCTATAAAGAGGTTTTCAAATGTAGTATTCTTTGAAAAGTAatctc
aaaaagctaagaaaatAAGTGCCATCCGAGGCAGATCAGAGGGGGATTAA
AAATCTATGACGAagagtttatttattttcttataagaagtATTAAATAT
GCACAAATTGCTGTGTCACTGATGTGTCCTGCATCAATATTCAGTGAGGA
TCATCTGCATCAACATCAACCATGGTTAACTGAGCTCTAAGTTCTCTCTG
CTATACAGAGCTATGATCCGCACCATGTTTTCCTAAAGACCACAGAAGAG
ATTCCAAAGTTGTACCATACGTTTTGCTTCGAAGTCTAAAAGAATACGAA
TAAAGTGCTTCCAGGATCTTTGAATTTCGCCGTCG
Run BLAST on NCBI

transcript from alignment at sc0001367:44121..44605

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035818 ID=TCONS_00035818|Name=TCONS_00035818|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0001367:44121..44605 (Clytia hemisphaerica)
CGACGGCGAAATTCAAAGATCCTGGAAGCACTTTATTCGTATTCTTTTAG
ACTTCGAAGCAAAACGTATGGTACAACTTTGGAATCTCTTCTGTGGTCTT
TAGGAAAACATGGTGCGGATCATAGCTCTGTATAGCAGAGAGAACTTAGA
GCTCAGTTAACCATGGTTGATGTTGATGCAGATGATCCTCACTGAATATT
GATGCAGGACACATCAGTGACACAGCAATTTGTGCATATTTAATacttct
tataagaaaataaataaactctTCGTCATAGATTTTTAATCCCCCTCTGA
TCTGCCTCGGATGGCACTTattttcttagctttttgagatTACTTTTCAA
AGAATACTACATTTGAAAACCTCTTTATAGAAATTGGACGTTCAAGACAA
GTTTTTCTTTAATAAAAGTGCATAACTCAAAGCTTCTTGGTTCCAAATAC
TTTTTCGATTTACCAGTTGAATTTTCCTTGGTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021027XLOC_021027Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035818-exon-sc0001367-1491911889:44121..44605TCONS_00035818-exon-sc0001367-1491911889:44121..44605Clytia hemisphaericaexon
TCONS_00035818-exon-sc0001367-1510915933:44121..44605TCONS_00035818-exon-sc0001367-1510915933:44121..44605Clytia hemisphaericaexon
TCONS_00035818-exon-sc0001367-1575043694:44121..44605TCONS_00035818-exon-sc0001367-1575043694:44121..44605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001367supercontigsc0001367:44121..44605 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.682308	1.05691	0.737813	0.44294	0	0	0	0	0	0.0318752	0	0	0	0	0	0	0	0	0	0	0	0	0.57938	0.309258	0	0	0	0	0.445152	0.167412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035818 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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