|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035812 ID=TCONS_00035812|Name=TCONS_00035812|organism=Clytia hemisphaerica|type=transcript|length=1334bp
AGGAAAGTGATTTCTTGGTTTGTTTGATGGTAAATAGCTGATGATTATAA
GATCTTATAGATGATGATGTACAGTACTTAACTTGATTGTAAAAAAGTGC
ACTTTGATAATCCTCGTgatttgttttatgttttaaagCTGCTTTCTTAA
CTCCCATCGCTTTCTTATCATGATGAATCTTCCATTCTccgtttttctct
ttctttttgtattctAAACTGTACATTTTTGCTTTCAACCCGATAAATTG
TTCCAATGGCACCCCCTTCAATTCATCTTTAAATTTGCCGATGACtttct
tgtttactttggaatGGTTAGGATGATCCTCTGGGTAGTCGCTGAAATCG
TAAAGGTGGCTGTTTGGTAGCATGTCTTGGTAGATGTCGTTGGTTTTGAT
GGAATAGCATAGAGAATCGGTGTCAGTGAAAAGAAGCTTAGATTGATCGC
CAGGGTAAAGAGATTTGATGTGATTGTAGTGGAAGTCGTACATGAGTGTT
TTGGAAAGTTCGAGGACAGAGAAGCCGGTGTAGATGGGACGATTTAGAAG
AAGGCTGGTTTGCTTACGCTCTACAATGATTAATTCTTCATTTATGATCT
TGAAGTCATGAAAAGAAGGTTGCGCGACTCGCTTGCGGAGAATTTCAGGA
TCTCGGACAACTTCAATTTTCCTACGTTGACGTAAATTTTCCATGGTTTT
GCCGAAACAGGAGTTGTTCATTAATTTGAAAAAGTCTTTCTCAAAATCAT
TTCTTGCCAAACTACGACGATAAGTATTTAAATCAATGTACTTTTTCAAC
CATGGAGACTGCTCAAAAGATATTACCCGATGAATCTTAGTCAAGACGAG
ACCTTGTGCTAAGTAGAATTTGGGATTTCGATAGTGGACGGTATAGTTAC
GCTTGTTGAAGAGATTAGGGATGAGTTTCTTGATTTTAGGAAGTTTCACT
TTATCTAGACTGTCTGCATCCAAAAGCCTCAATTGTTCCGGGGAAAGCAT
GTCAGGGGTTACTTGAATCCTCTCAGGTGCCAATGGATAATCTGTGTGTA
GGTCATGTAAATGTTGTGGGTAGTCTGTAAAGAAAAACAGAATAAGGATT
TTCATAAAGCAATtacataaaatatctaaaagcCTTATCCATACCGGATG
ATAATACAATTGTATCAATGGAAGAAAAAACATATTTCGTCTATCTTATC
CTAACCTTCTCTTTCTTAATCTTATACTTACCAAGATCGACTACTAGGAT
GTAACCAGTTTCATTATCATCGGGAATAGTTGTTACATCTAATGCTGCAA
TCTCCTCCTCACTCAACGATTGGAAATTCCTCGT Run BLAST on NCBI protein sequence of TCONS_00035812-protein >TCONS_00035812-protein ID=TCONS_00035812-protein|Name=TCONS_00035812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MFFLPLIQLYYHPVWIRLLDILCNCFMKILILFFFTDYPQHLHDLHTDYP
LAPERIQVTPDMLSPEQLRLLDADSLDKVKLPKIKKLIPNLFNKRNYTVH
YRNPKFYLAQGLVLTKIHRVISFEQSPWLKKYIDLNTYRRSLARNDFEKD
FFKLMNNSCFGKTMENLRQRRKIEVVRDPEILRKRVAQPSFHDFKIINEE
LIIVERKQTSLLLNRPIYTGFSVLELSKTLMYDFHYNHIKSLYPGDQSKL
LFTDTDSLCYSIKTNDIYQDMLPNSHLYDFSDYPEDHPNHSKVNKKVIGK
FKDELKGVPLEQFIGLKAKMYSLEYKKKEKNGEWKIHHDKKAMGVKKAAL
KHKTNHEDYQSALFYNQVKYCTSSSIRSYNHQLFTIKQTKKSLS Run BLAST on NCBI transcript from alignment at sc0001365:43304..44637 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035812 ID=TCONS_00035812|Name=TCONS_00035812|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at sc0001365:43304..44637 (Clytia hemisphaerica)
ACGAGGAATTTCCAATCGTTGAGTGAGGAGGAGATTGCAGCATTAGATGT
AACAACTATTCCCGATGATAATGAAACTGGTTACATCCTAGTAGTCGATC
TTGGTAAGTATAAGATTAAGAAAGAGAAGGTTAGGATAAGATAGACGAAA
TATGTTTTTTCTTCCATTGATACAATTGTATTATCATCCGGTATGGATAA
GgcttttagatattttatgtaATTGCTTTATGAAAATCCTTATTCTGTTT
TTCTTTACAGACTACCCACAACATTTACATGACCTACACACAGATTATCC
ATTGGCACCTGAGAGGATTCAAGTAACCCCTGACATGCTTTCCCCGGAAC
AATTGAGGCTTTTGGATGCAGACAGTCTAGATAAAGTGAAACTTCCTAAA
ATCAAGAAACTCATCCCTAATCTCTTCAACAAGCGTAACTATACCGTCCA
CTATCGAAATCCCAAATTCTACTTAGCACAAGGTCTCGTCTTGACTAAGA
TTCATCGGGTAATATCTTTTGAGCAGTCTCCATGGTTGAAAAAGTACATT
GATTTAAATACTTATCGTCGTAGTTTGGCAAGAAATGATTTTGAGAAAGA
CTTTTTCAAATTAATGAACAACTCCTGTTTCGGCAAAACCATGGAAAATT
TACGTCAACGTAGGAAAATTGAAGTTGTCCGAGATCCTGAAATTCTCCGC
AAGCGAGTCGCGCAACCTTCTTTTCATGACTTCAAGATCATAAATGAAGA
ATTAATCATTGTAGAGCGTAAGCAAACCAGCCTTCTTCTAAATCGTCCCA
TCTACACCGGCTTCTCTGTCCTCGAACTTTCCAAAACACTCATGTACGAC
TTCCACTACAATCACATCAAATCTCTTTACCCTGGCGATCAATCTAAGCT
TCTTTTCACTGACACCGATTCTCTATGCTATTCCATCAAAACCAACGACA
TCTACCAAGACATGCTACCAAACAGCCACCTTTACGATTTCAGCGACTAC
CCAGAGGATCATCCTAACCattccaaagtaaacaagaaaGTCATCGGCAA
ATTTAAAGATGAATTGAAGGGGGTGCCATTGGAACAATTTATCGGGTTGA
AAGCAAAAATGTACAGTTTagaatacaaaaagaaagagaaaaacggAGAA
TGGAAGATTCATCATGATAAGAAAGCGATGGGAGTTAAGAAAGCAGcttt
aaaacataaaacaaatcACGAGGATTATCAAAGTGCACTTTTTTACAATC
AAGTTAAGTACTGTACATCATCATCTATAAGATCTTATAATCATCAGCTA
TTTACCATCAAACAAACCAAGAAATCACTTTCCT Coding sequence (CDS) from alignment at sc0001365:43304..44637 >TCONS_00035812 ID=TCONS_00035812|Name=TCONS_00035812|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0001365:43304..44637 (Clytia hemisphaerica)
ATGTTTTTTCTTCCATTGATACAATTGTATTATCATCCGGTATGGATAAG
gcttttagatattttatgtaATTGCTTTATGAAAATCCTTATTCTGTTTT
TCTTTACAGACTACCCACAACATTTACATGACCTACACACAGATTATCCA
TTGGCACCTGAGAGGATTCAAGTAACCCCTGACATGCTTTCCCCGGAACA
ATTGAGGCTTTTGGATGCAGACAGTCTAGATAAAGTGAAACTTCCTAAAA
TCAAGAAACTCATCCCTAATCTCTTCAACAAGCGTAACTATACCGTCCAC
TATCGAAATCCCAAATTCTACTTAGCACAAGGTCTCGTCTTGACTAAGAT
TCATCGGGTAATATCTTTTGAGCAGTCTCCATGGTTGAAAAAGTACATTG
ATTTAAATACTTATCGTCGTAGTTTGGCAAGAAATGATTTTGAGAAAGAC
TTTTTCAAATTAATGAACAACTCCTGTTTCGGCAAAACCATGGAAAATTT
ACGTCAACGTAGGAAAATTGAAGTTGTCCGAGATCCTGAAATTCTCCGCA
AGCGAGTCGCGCAACCTTCTTTTCATGACTTCAAGATCATAAATGAAGAA
TTAATCATTGTAGAGCGTAAGCAAACCAGCCTTCTTCTAAATCGTCCCAT
CTACACCGGCTTCTCTGTCCTCGAACTTTCCAAAACACTCATGTACGACT
TCCACTACAATCACATCAAATCTCTTTACCCTGGCGATCAATCTAAGCTT
CTTTTCACTGACACCGATTCTCTATGCTATTCCATCAAAACCAACGACAT
CTACCAAGACATGCTACCAAACAGCCACCTTTACGATTTCAGCGACTACC
CAGAGGATCATCCTAACCattccaaagtaaacaagaaaGTCATCGGCAAA
TTTAAAGATGAATTGAAGGGGGTGCCATTGGAACAATTTATCGGGTTGAA
AGCAAAAATGTACAGTTTagaatacaaaaagaaagagaaaaacggAGAAT
GGAAGATTCATCATGATAAGAAAGCGATGGGAGTTAAGAAAGCAGcttta
aaacataaaacaaatcACGAGGATTATCAAAGTGCACTTTTTTACAATCA
AGTTAAGTACTGTACATCATCATCTATAAGATCTTATAATCATCAGCTAT
TTACCATCAAACAAACCAAGAAATCACTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035812-exon-sc0001365-1491911889:43304..44637 | TCONS_00035812-exon-sc0001365-1491911889:43304..44637 | Clytia hemisphaerica | exon |
| TCONS_00035812-exon-sc0001365-1510915933:43304..44637 | TCONS_00035812-exon-sc0001365-1510915933:43304..44637 | Clytia hemisphaerica | exon |
| TCONS_00035812-exon-sc0001365-1575043694:43304..44637 | TCONS_00035812-exon-sc0001365-1575043694:43304..44637 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001365 | supercontig | sc0001365:43304..44637 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023211 | DNA_pol_palm_dom |
Blast
The following BLAST results are available for this feature:
|
