TCONS_00035810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035810
Unique NameTCONS_00035810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035810 ID=TCONS_00035810|Name=TCONS_00035810|organism=Clytia hemisphaerica|type=transcript|length=747bp
TGTTGGAAAAATCAATGTTACCAATGACAAGGGTAGGAGTAGTGTTTCCT
GGTTTGATGTTTGATGGGACAAGTTTACAGCTTTTATCTACCCATTCAGC
CCACTTGTCTTCAATGAACTTTGCATCGGTATAACTTATTCCGTGACCAA
GTCTTGATAAGTCGGTGACAACATTACTGGAACCTGTTTTTCTGTATTCT
GATAGCGATAGCAATACTTGATTAAGTGACGGCGTTGCATTAGGTGATAA
CGATTCGATATCCGTACACAATTTGGTAACTTTGGGGACTTTGGACGGTG
GTAATTTAACGATTCCGTCCTTTCCGTACGAGGCATCTGGACAGACTATC
CAGGCAATTAAGTTATACAGCAGGTCAGAAGATGGTGCTAGTTCGCTGTT
GATGATATCCTGGGGTGTTGGCGGCCATAGTTgttcctttgttttgttca
ttgaGCTGATAGACCGACCAATCATTTTGCCGATATTTTTCACACTGATT
GATTCTTCGATGCCCGTCGAGTTGGACATAGCATTTAAACAATCCGACAT
GATTCTGCCGTTATTTGCGAGAACATACTCAGATACGTTGGCTTtacttt
ttgtgaaaaagttaGTTTATGGCCAAATCTTTCCGTCAGCTTACTTTTCA
CGTCTACGCTTCTAACCTTAGCTGATTGTTTTGTTTGGAGTCCTGTATAA
AATGTTGATAATTGCGCTAAAGTATATATCTCCTGTCTTTCAATCCC
Run BLAST on NCBI

protein sequence of TCONS_00035810-protein

>TCONS_00035810-protein ID=TCONS_00035810-protein|Name=TCONS_00035810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MSDCLNAMSNSTGIEESISVKNIGKMIGRSISSMNKTKEQLWPPTPQDII
NSELAPSSDLLYNLIAWIVCPDASYGKDGIVKLPPSKVPKVTKLCTDIES
LSPNATPSLNQVLLSLSEYRKTGSSNVVTDLSRLGHGISYTDAKFIEDKW
AEWVDKSCKLVPSNIKPGNTTPTLVIGNIDFSN
Run BLAST on NCBI

transcript from alignment at sc0001365:27861..28607

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035810 ID=TCONS_00035810|Name=TCONS_00035810|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at sc0001365:27861..28607 (Clytia hemisphaerica)
GGGATTGAAAGACAGGAGATATATACTTTAGCGCAATTATCAACATTTTA
TACAGGACTCCAAACAAAACAATCAGCTAAGGTTAGAAGCGTAGACGTGA
AAAGTAAGCTGACGGAAAGATTTGGCCATAAACtaactttttcacaaaaa
gtaAAGCCAACGTATCTGAGTATGTTCTCGCAAATAACGGCAGAATCATG
TCGGATTGTTTAAATGCTATGTCCAACTCGACGGGCATCGAAGAATCAAT
CAGTGTGAAAAATATCGGCAAAATGATTGGTCGGTCTATCAGCtcaatga
acaaaacaaaggaacAACTATGGCCGCCAACACCCCAGGATATCATCAAC
AGCGAACTAGCACCATCTTCTGACCTGCTGTATAACTTAATTGCCTGGAT
AGTCTGTCCAGATGCCTCGTACGGAAAGGACGGAATCGTTAAATTACCAC
CGTCCAAAGTCCCCAAAGTTACCAAATTGTGTACGGATATCGAATCGTTA
TCACCTAATGCAACGCCGTCACTTAATCAAGTATTGCTATCGCTATCAGA
ATACAGAAAAACAGGTTCCAGTAATGTTGTCACCGACTTATCAAGACTTG
GTCACGGAATAAGTTATACCGATGCAAAGTTCATTGAAGACAAGTGGGCT
GAATGGGTAGATAAAAGCTGTAAACTTGTCCCATCAAACATCAAACCAGG
AAACACTACTCCTACCCTTGTCATTGGTAACATTGATTTTTCCAACA

Coding sequence (CDS) from alignment at sc0001365:27861..28607

>TCONS_00035810 ID=TCONS_00035810|Name=TCONS_00035810|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0001365:27861..28607 (Clytia hemisphaerica)
ATGTCGGATTGTTTAAATGCTATGTCCAACTCGACGGGCATCGAAGAATC
AATCAGTGTGAAAAATATCGGCAAAATGATTGGTCGGTCTATCAGCtcaa
tgaacaaaacaaaggaacAACTATGGCCGCCAACACCCCAGGATATCATC
AACAGCGAACTAGCACCATCTTCTGACCTGCTGTATAACTTAATTGCCTG
GATAGTCTGTCCAGATGCCTCGTACGGAAAGGACGGAATCGTTAAATTAC
CACCGTCCAAAGTCCCCAAAGTTACCAAATTGTGTACGGATATCGAATCG
TTATCACCTAATGCAACGCCGTCACTTAATCAAGTATTGCTATCGCTATC
AGAATACAGAAAAACAGGTTCCAGTAATGTTGTCACCGACTTATCAAGAC
TTGGTCACGGAATAAGTTATACCGATGCAAAGTTCATTGAAGACAAGTGG
GCTGAATGGGTAGATAAAAGCTGTAAACTTGTCCCATCAAACATCAAACC
AGGAAACACTACTCCTACCCTTGTCATTGGTAACATTGATTTTTCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021019XLOC_021019Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035810-proteinTCONS_00035810-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035810-exon-sc0001365-1491911889:27861..28607TCONS_00035810-exon-sc0001365-1491911889:27861..28607Clytia hemisphaericaexon
TCONS_00035810-exon-sc0001365-1510915933:27861..28607TCONS_00035810-exon-sc0001365-1510915933:27861..28607Clytia hemisphaericaexon
TCONS_00035810-exon-sc0001365-1575043694:27861..28607TCONS_00035810-exon-sc0001365-1575043694:27861..28607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001365supercontigsc0001365:27861..28607 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131888	0.57875	0.0746649	0.0730479	0.177858	0.281091	0.169562	0	0.0555695	0	0.0668099	0	0.0877142	0.22773	0.187225	0.0803685	0.0495037	0.0507397	0.210299	0.0733543	0	0.186594	0	0.137481	0.283204	0.505505	0.090422	0.289502	0.0731924	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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