TCONS_00035808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035808
Unique NameTCONS_00035808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035808 ID=TCONS_00035808|Name=TCONS_00035808|organism=Clytia hemisphaerica|type=transcript|length=734bp
TTGGTTCAAAAATTGGGAATTGTTATTGAGTTTCCCTATATCATTCAAAA
CCTCCATAAACACATCTAGCTGTGTTTGTGCATCACCTGTTGCACTTTCA
CGAAGCCCAAGAACCAAATATTTCCCATTTCCAGTATTGATGTCATATGT
AATAAATGACCTTCTATGTTTGCTTGTTCCGTCACTTTGGAGAGTATTGT
TACTGTCCAAAGCAATATCTTTCCCTCCACCAGTTAGCTCGTCAGCTATC
TGGAGTTGAGCAAGGGCCCTTGCTTCGAGAAGCATGTACTTGCAAATGAA
GGTTTAGGAAGCCGACCCACTTCCATTCCTGTTAGTTTTGACATGACAGT
TCGAATAACAGACTCAATGTTTCTTGAACCTAGCCCATAATATAACAGGT
CTTCATAGACCTGTCTTATCTCATCTGAATATTTGCCGTCTTTAAAAACT
TGGACTTCATTATCTTTAAGGAATGACCCAATTTGTTCTTCAAGTTTAGA
CTTTTCATCTTCTAAAAACTCAATTTGATCTTTAAGATCTTGCACATAGG
ATTGAAAAACAGTTTCTTCCTTGGTATTAGCTTCCTCTATTAAACATCTA
GCTTTTTTTCTCCAAATACAAAgggattttctaaattttccattactttt
aagcattttttgtaGTCGAAAGTCAAGCTTATCAACAGAATCTTGCAGTa
gtacattttcattttctttctcttttaattcctt
Run BLAST on NCBI

protein sequence of TCONS_00035808-protein

>TCONS_00035808-protein ID=TCONS_00035808-protein|Name=TCONS_00035808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
KELKEKENENVLLQDSVDKLDFRLQKMLKSNGKFRKSLCIWRKKARCLIE
EANTKEETVFQSYVQDLKDQIEFLEDEKSKLEEQIGSFLKDNEVQVFKDG
KYSDEIRQVYEDLLYYGLGSRNIESVIRTVMSKLTGMEVGRLPKPSFAST
CFSKQGPLLNSR
Run BLAST on NCBI

transcript from alignment at sc0001365:4428..5161

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035808 ID=TCONS_00035808|Name=TCONS_00035808|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at sc0001365:4428..5161 (Clytia hemisphaerica)
aaggaattaaaagagaaagaaaatgaaaatgtactACTGCAAGATTCTGT
TGATAAGCTTGACTTTCGACtacaaaaaatgcttaaaagtaatggaaaat
ttagaaaatcccTTTGTATTTGGAGAAAAAAAGCTAGATGTTTAATAGAG
GAAGCTAATACCAAGGAAGAAACTGTTTTTCAATCCTATGTGCAAGATCT
TAAAGATCAAATTGAGTTTTTAGAAGATGAAAAGTCTAAACTTGAAGAAC
AAATTGGGTCATTCCTTAAAGATAATGAAGTCCAAGTTTTTAAAGACGGC
AAATATTCAGATGAGATAAGACAGGTCTATGAAGACCTGTTATATTATGG
GCTAGGTTCAAGAAACATTGAGTCTGTTATTCGAACTGTCATGTCAAAAC
TAACAGGAATGGAAGTGGGTCGGCTTCCTAAACCTTCATTTGCAAGTACA
TGCTTCTCGAAGCAAGGGCCCTTGCTCAACTCCAGATAGCTGACGAGCTA
ACTGGTGGAGGGAAAGATATTGCTTTGGACAGTAACAATACTCTCCAAAG
TGACGGAACAAGCAAACATAGAAGGTCATTTATTACATATGACATCAATA
CTGGAAATGGGAAATATTTGGTTCTTGGGCTTCGTGAAAGTGCAACAGGT
GATGCACAAACACAGCTAGATGTGTTTATGGAGGTTTTGAATGATATAGG
GAAACTCAATAACAATTCCCAATTTTTGAACCAA

Coding sequence (CDS) from alignment at sc0001365:4428..5161

>TCONS_00035808 ID=TCONS_00035808|Name=TCONS_00035808|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0001365:4428..5161 (Clytia hemisphaerica)
aaggaattaaaagagaaagaaaatgaaaatgtactACTGCAAGATTCTGT
TGATAAGCTTGACTTTCGACtacaaaaaatgcttaaaagtaatggaaaat
ttagaaaatcccTTTGTATTTGGAGAAAAAAAGCTAGATGTTTAATAGAG
GAAGCTAATACCAAGGAAGAAACTGTTTTTCAATCCTATGTGCAAGATCT
TAAAGATCAAATTGAGTTTTTAGAAGATGAAAAGTCTAAACTTGAAGAAC
AAATTGGGTCATTCCTTAAAGATAATGAAGTCCAAGTTTTTAAAGACGGC
AAATATTCAGATGAGATAAGACAGGTCTATGAAGACCTGTTATATTATGG
GCTAGGTTCAAGAAACATTGAGTCTGTTATTCGAACTGTCATGTCAAAAC
TAACAGGAATGGAAGTGGGTCGGCTTCCTAAACCTTCATTTGCAAGTACA
TGCTTCTCGAAGCAAGGGCCCTTGCTCAACTCCAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021017XLOC_021017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035808-exon-sc0001365-1491911889:4428..5161TCONS_00035808-exon-sc0001365-1491911889:4428..5161Clytia hemisphaericaexon
TCONS_00035808-exon-sc0001365-1510915933:4428..5161TCONS_00035808-exon-sc0001365-1510915933:4428..5161Clytia hemisphaericaexon
TCONS_00035808-exon-sc0001365-1575043694:4428..5161TCONS_00035808-exon-sc0001365-1575043694:4428..5161Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035808-proteinTCONS_00035808-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001365supercontigsc0001365:4428..5161 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0658979	0.0765137	0	0	0	0	0	0.113891	0	0	0	0.0449431	0	0	0	0	0	0	0	0	0	0	0.140885	0	0.129506	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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