TCONS_00035805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035805
Unique NameTCONS_00035805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035805 ID=TCONS_00035805|Name=TCONS_00035805|organism=Clytia hemisphaerica|type=transcript|length=578bp
TTAGCCGTTACACTCCCCCAACAGATATGAAAAATACTAATAGAAATTAt
atgaatattgaaaatacttgaaaatatactaattgaaataaatgtattaa
ataaatttttcttgaattatgttaaattttaataatttttattttatttt
tgaatttttccataaAACATCAAATCACATTTAGAATATGAAGATTcatt
taaattgcaaaatttgcaaatcatttcaatttgaACAATTCCTTTGATAA
ATCAATCTCATCAGCTcccaatatcaaaatcaaagtccTCACAGCACGTG
TCGTTAAACGCTTTTTATTCTCATTACTATTCTGATATTCAACCACAACA
TCACGAATGGCATTATCACGACCACGATTTACTGATTTGATACGACCATA
TTGATAAGTTGAAGCTATGGCAGAATCCTGTTTGGTGAACAAAACGAAGT
CACCTGGTTGTAGATCACGATCAGTGTTAAACCATTTAGGTTGGTGCATC
AATGATGGTACATGCGAGGTTAACCAACACTCAAACCACGCATTGAAGAT
TTTCCCATTGGAACGGATGATTTTATCA
Run BLAST on NCBI

protein sequence of TCONS_00035805-protein

>TCONS_00035805-protein ID=TCONS_00035805-protein|Name=TCONS_00035805-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
DKIIRSNGKIFNAWFECWLTSHVPSLMHQPKWFNTDRDLQPGDFVLFTKQ
DSAIASTYQYGRIKSVNRGRDNAIRDVVVEYQNSNENKKRLTTRAVRTLI
LILGADEIDLSKELFKLK
Run BLAST on NCBI

transcript from alignment at sc0001364:25948..26525

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035805 ID=TCONS_00035805|Name=TCONS_00035805|organism=Clytia hemisphaerica|type=transcript|length=578bp|location=Sequence derived from alignment at sc0001364:25948..26525 (Clytia hemisphaerica)
TGATAAAATCATCCGTTCCAATGGGAAAATCTTCAATGCGTGGTTTGAGT
GTTGGTTAACCTCGCATGTACCATCATTGATGCACCAACCTAAATGGTTT
AACACTGATCGTGATCTACAACCAGGTGACTTCGTTTTGTTCACCAAACA
GGATTCTGCCATAGCTTCAACTTATCAATATGGTCGTATCAAATCAGTAA
ATCGTGGTCGTGATAATGCCATTCGTGATGTTGTGGTTGAATATCAGAAT
AGTAATGAGAATAAAAAGCGTTTAACGACACGTGCTGTGAggactttgat
tttgatattgggAGCTGATGAGATTGATTTATCAAAGGAATTGTtcaaat
tgaaatgatttgcaaattttgcaatttaaatgAATCTTCATATTCTAAAT
GTGATTTGATGTTttatggaaaaattcaaaaataaaataaaaattattaa
aatttaacataattcaagaaaaatttatttaatacatttatttcaattag
tatattttcaagtattttcaatattcataTAATTTCTATTAGTATTTTTC
ATATCTGTTGGGGGAGTGTAACGGCTAA

Coding sequence (CDS) from alignment at sc0001364:25948..26525

>TCONS_00035805 ID=TCONS_00035805|Name=TCONS_00035805|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0001364:25948..26525 (Clytia hemisphaerica)
GATAAAATCATCCGTTCCAATGGGAAAATCTTCAATGCGTGGTTTGAGTG
TTGGTTAACCTCGCATGTACCATCATTGATGCACCAACCTAAATGGTTTA
ACACTGATCGTGATCTACAACCAGGTGACTTCGTTTTGTTCACCAAACAG
GATTCTGCCATAGCTTCAACTTATCAATATGGTCGTATCAAATCAGTAAA
TCGTGGTCGTGATAATGCCATTCGTGATGTTGTGGTTGAATATCAGAATA
GTAATGAGAATAAAAAGCGTTTAACGACACGTGCTGTGAggactttgatt
ttgatattgggAGCTGATGAGATTGATTTATCAAAGGAATTGTtcaaatt
gaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021014XLOC_021014Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035805-proteinTCONS_00035805-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035805-exon-sc0001364-1491911889:25948..26525TCONS_00035805-exon-sc0001364-1491911889:25948..26525Clytia hemisphaericaexon
TCONS_00035805-exon-sc0001364-1510915933:25948..26525TCONS_00035805-exon-sc0001364-1510915933:25948..26525Clytia hemisphaericaexon
TCONS_00035805-exon-sc0001364-1575043694:25948..26525TCONS_00035805-exon-sc0001364-1575043694:25948..26525Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001364supercontigsc0001364:25948..26525 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.41705	2.25024	3.05308	1.91875	0.470619	0.676001	0.269823	0.563994	0.106309	0	0.288693	0.926099	0.588431	0.472202	0.87098	0.985126	0.49183	0.692188	0.596948	0.59206	0.725119	1.39803	1.2115	0.8226	0.412909	0.110684	1.32012	1.48068	2.69671	1.64722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top