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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035803 ID=TCONS_00035803|Name=TCONS_00035803|organism=Clytia hemisphaerica|type=transcript|length=1339bp
NNTGTCTCTCGTAAGCATCGTTCTGCCTGGTTGCCTGATGATTTGACACC
GTAGATTAaagttttgataactttttgtTCTGGTGGTTTGGTAAAATCAG
TGTTTCGTTCCAGAGATATCGTTGCAGAACCCAGTGTGATTTGTCTAGCT
TGACCGAGTTGTACATCTTTTGCACATCTGTGTGGAATCCGAATCTGTAT
CCCCTCCACCGAAGGAAGATGTTGAGAAGCTTGTTCATATTGTTTCTCCC
GTTAGCGATGATGTCATTTAGGGAAAAACTGCTCTTCGTTGGCATCGAGG
CATCAAAACCAACGCGACAAGGTGTTGATACAGAGTTTTCTTTCCAGACT
GCTCTCCATGGGATGAAGTTCTGGATATTAGATTGATGAAGAAGGTCTTG
GTCtgcttgagaaaggttttttacacaaTCAACATACCCTAATGATTGAA
GTTTCTCTTCAGATTTGATGATGTCAGCTTTGTCATCAGGGTTTTTCTCC
AGACGTTTGAGCTTGAGCGTTGATTGAAGACTTGAAGAGCGATGCCACGA
TTTGGTTGAAGACGATCTGTGCTGGCAATGAGAGGAAGGGTCGCTGTTGA
ACTTCTCTCCTTGATGTTGACTGTGACAGAGCTGTTGATAATCTCTTGCT
CTGCCTCCTCTTTGATGCTACATATGCCGTTGGGTGATTCTTTGCAGGTT
GAACAGTCTCTGCATTTGGTACATCGATAAGTGATTGAGCTTCCGGCTTC
CTCAACAGAGATGAAGAAGTGCATTGGATTTGTTGTATCGTCTTGGACAT
CTCCAAAATGATTGTTGTAGCCTAGAAGACGGACATCTGGATTGACGTGG
TATCCAAAGGAGTAGAGTCTGAGTTGATTGGTGACAAAATTGGTTGaatg
attttggtgaatgaaaATGAATACCTGATGTGGTCCTCCAATCAAACCAA
AGGAACCATCGTTATTTTCGAAGGATGACTCATAGATGGTGAGACCTGAT
AGCATTTGGAAGATGGGCTTTGGAAAATGACGTAGATATTTGACACCAAT
GATGAAGTCGACATCACCACCGACCTTCTCTGGAACCGTTGGAAGTGTTG
ATGCATTGCCTCCATTCGTAATGAAAGCTGTCTTGATGTCGTTGAAAACT
TCCCCATTGAGTGGATACATAGGGAATGTATTTGTGACTCGATCGAGACA
AGGTCTAGTCATCAGTGCATTACCCCCAATTCGTAAAGGTAAGTTGACTT
CATAGATACCATGATTGGTTGGACTTGAGATGCCAGCAATTCCTTTCATA
TGGATTGTACCATCGTAGACTTGTTTTGCTCTTGATGGA Run BLAST on NCBI protein sequence of TCONS_00035803-protein >TCONS_00035803-protein ID=TCONS_00035803-protein|Name=TCONS_00035803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
PSRAKQVYDGTIHMKGIAGISSPTNHGIYEVNLPLRIGGNALMTRPCLDR
VTNTFPMYPLNGEVFNDIKTAFITNGGNASTLPTVPEKVGGDVDFIIGVK
YLRHFPKPIFQMLSGLTIYESSFENNDGSFGLIGGPHQVFIFIHQNHSTN
FVTNQLRLYSFGYHVNPDVRLLGYNNHFGDVQDDTTNPMHFFISVEEAGS
SITYRCTKCRDCSTCKESPNGICSIKEEAEQEIINSSVTVNIKERSSTAT
LPLIASTDRLQPNRGIALQVFNQRSSSNVWRKTLMTKLTSSNLKRNFNH Run BLAST on NCBI transcript from alignment at sc0001364:22077..23415 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035803 ID=TCONS_00035803|Name=TCONS_00035803|organism=Clytia hemisphaerica|type=transcript|length=1339bp|location=Sequence derived from alignment at sc0001364:22077..23415 (Clytia hemisphaerica)
TCCATCAAGAGCAAAACAAGTCTACGATGGTACAATCCATATGAAAGGAA
TTGCTGGCATCTCAAGTCCAACCAATCATGGTATCTATGAAGTCAACTTA
CCTTTACGAATTGGGGGTAATGCACTGATGACTAGACCTTGTCTCGATCG
AGTCACAAATACATTCCCTATGTATCCACTCAATGGGGAAGTTTTCAACG
ACATCAAGACAGCTTTCATTACGAATGGAGGCAATGCATCAACACTTCCA
ACGGTTCCAGAGAAGGTCGGTGGTGATGTCGACTTCATCATTGGTGTCAA
ATATCTACGTCATTTTCCAAAGCCCATCTTCCAAATGCTATCAGGTCTCA
CCATCTATGAGTCATCCTTCGAAAATAACGATGGTTCCTTTGGTTTGATT
GGAGGACCACATCAGGTATTCATtttcattcaccaaaatcattCAACCAA
TTTTGTCACCAATCAACTCAGACTCTACTCCTTTGGATACCACGTCAATC
CAGATGTCCGTCTTCTAGGCTACAACAATCATTTTGGAGATGTCCAAGAC
GATACAACAAATCCAATGCACTTCTTCATCTCTGTTGAGGAAGCCGGAAG
CTCAATCACTTATCGATGTACCAAATGCAGAGACTGTTCAACCTGCAAAG
AATCACCCAACGGCATATGTAGCATCAAAGAGGAGGCAGAGCAAGAGATT
ATCAACAGCTCTGTCACAGTCAACATCAAGGAGAGAAGTTCAACAGCGAC
CCTTCCTCTCATTGCCAGCACAGATCGTCTTCAACCAAATCGTGGCATCG
CTCTTCAAGTCTTCAATCAACGCTCAAGCTCAAACGTCTGGAGAAAAACC
CTGATGACAAAGCTGACATCATCAAATCTGAAGAGAAACTTCAATCATTA
GGGTATGTTGAttgtgtaaaaaacctttctcaagcaGACCAAGACCTTCT
TCATCAATCTAATATCCAGAACTTCATCCCATGGAGAGCAGTCTGGAAAG
AAAACTCTGTATCAACACCTTGTCGCGTTGGTTTTGATGCCTCGATGCCA
ACGAAGAGCAGTTTTTCCCTAAATGACATCATCGCTAACGGGAGAAACAA
TATGAACAAGCTTCTCAACATCTTCCTTCGGTGGAGGGGATACAGATTCG
GATTCCACACAGATGTGCAAAAGATGTACAACTCGGTCAAGCTAGACAAA
TCACACTGGGTTCTGCAACGATATCTCTGGAACGAAACACTGATTTTACC
AAACCACCAGAacaaaaagttatcaaaacttTAATCTACGGTGTCAAATC
ATCAGGCAACCAGGCAGAACGATGCTTACGAGAGACANN Coding sequence (CDS) from alignment at sc0001364:22077..23415 >TCONS_00035803 ID=TCONS_00035803|Name=TCONS_00035803|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0001364:22077..23415 (Clytia hemisphaerica)
CCATCAAGAGCAAAACAAGTCTACGATGGTACAATCCATATGAAAGGAAT
TGCTGGCATCTCAAGTCCAACCAATCATGGTATCTATGAAGTCAACTTAC
CTTTACGAATTGGGGGTAATGCACTGATGACTAGACCTTGTCTCGATCGA
GTCACAAATACATTCCCTATGTATCCACTCAATGGGGAAGTTTTCAACGA
CATCAAGACAGCTTTCATTACGAATGGAGGCAATGCATCAACACTTCCAA
CGGTTCCAGAGAAGGTCGGTGGTGATGTCGACTTCATCATTGGTGTCAAA
TATCTACGTCATTTTCCAAAGCCCATCTTCCAAATGCTATCAGGTCTCAC
CATCTATGAGTCATCCTTCGAAAATAACGATGGTTCCTTTGGTTTGATTG
GAGGACCACATCAGGTATTCATtttcattcaccaaaatcattCAACCAAT
TTTGTCACCAATCAACTCAGACTCTACTCCTTTGGATACCACGTCAATCC
AGATGTCCGTCTTCTAGGCTACAACAATCATTTTGGAGATGTCCAAGACG
ATACAACAAATCCAATGCACTTCTTCATCTCTGTTGAGGAAGCCGGAAGC
TCAATCACTTATCGATGTACCAAATGCAGAGACTGTTCAACCTGCAAAGA
ATCACCCAACGGCATATGTAGCATCAAAGAGGAGGCAGAGCAAGAGATTA
TCAACAGCTCTGTCACAGTCAACATCAAGGAGAGAAGTTCAACAGCGACC
CTTCCTCTCATTGCCAGCACAGATCGTCTTCAACCAAATCGTGGCATCGC
TCTTCAAGTCTTCAATCAACGCTCAAGCTCAAACGTCTGGAGAAAAACCC
TGATGACAAAGCTGACATCATCAAATCTGAAGAGAAACTTCAATCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035803-exon-sc0001364-1491911889:22077..23415 | TCONS_00035803-exon-sc0001364-1491911889:22077..23415 | Clytia hemisphaerica | exon |
| TCONS_00035803-exon-sc0001364-1510915933:22077..23415 | TCONS_00035803-exon-sc0001364-1510915933:22077..23415 | Clytia hemisphaerica | exon |
| TCONS_00035803-exon-sc0001364-1575043694:22077..23415 | TCONS_00035803-exon-sc0001364-1575043694:22077..23415 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001364 | supercontig | sc0001364:22077..23415 . |
Blast
The following BLAST results are available for this feature:
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