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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035791 ID=TCONS_00035791|Name=TCONS_00035791|organism=Clytia hemisphaerica|type=transcript|length=3346bpRun BLAST on NCBI protein sequence of TCONS_00035791-protein >TCONS_00035791-protein ID=TCONS_00035791-protein|Name=TCONS_00035791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=611bp IGQQRNQSNVAIYARRIIMMYRKFNYISPFFLQWFGNIVTMDWWSDLWLNRun BLAST on NCBI transcript from alignment at sc0001363:2422..21695- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035791 ID=TCONS_00035791|Name=TCONS_00035791|organism=Clytia hemisphaerica|type=transcript|length=19274bp|location=Sequence derived from alignment at sc0001363:2422..21695- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001363:2422..21695- >TCONS_00035791 ID=TCONS_00035791|Name=TCONS_00035791|organism=Clytia hemisphaerica|type=CDS|length=27540bp|location=Sequence derived from alignment at sc0001363:2422..21695- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035791 vs. Swiss-Prot (Human)
Match: AMPE (Glutamyl aminopeptidase OS=Homo sapiens GN=ENPEP PE=1 SV=3) HSP 1 Score: 380.563 bits (976), Expect = 4.539e-114 Identity = 217/577 (37.61%), Postives = 326/577 (56.50%), Query Frame = 2
Query: 98 QWFGNIVTMDWWSDLWLNEGFASYIQFIGMDKVHPDWRALDFQLTRDVANAMDLDSLISSHPIYIEVERPEDIDQIFDAISYAKGGSILRMLDNFLGEEVFKKGLNIYLRRFSYKNAKSSDLWKALSEASKLAGDNYNVTDVMNSWIFQMNFPELRIKSLNNGEFKVDQVRFLRDQNPDYSKEKFNSSYGYRWHIPFKYTTLKLDDGAKSVEVIRNSTLAWMKYRNIVVDTG--SIDYLMKGNAGQYGFYRVNYDDAGWTKMIKVLKYNHKVLDVKDRAGLISDVFALANAGRLKEYTIALDVFDYIDADTDYLPWKAASDGINFIPGTLTSTRPAQKKITKYILGKVSALYEKYGFEDNDDFLERYLQVEIVNLACNNGHIGCLGNSTKLFKDWMEKDTPVPGDFRNLVYYYGIKNSGIE-AWDEMFTKFLSNKIASEKTKLLYGLAAIQEPWALERYLDYAISGRKIRPQDASYVFDYVANHNPIGRPVAWNFLKQNWDKIYEMF--KDTFFGRIVGSVTSGFTTNYELDKMRAFIAEKKPE--NGQRIIQQSEETIKSTIEWLSKYEEPIDQWL 1807
QWFGNIVTMDWW DLWLNEGFAS+ +F+G++ DW+ D L DV + DSL+SSHPI + V P++I +FD ISY+KG SILRML++++ E F+KG +YL ++ +KNAK+SD W AL EAS+L V +VM++W QM +P L + NG + Q RFL D P + + S GY W+IP K+T D+ SV R+ + I +++ S + +K N GFYRVNY+ A W + L NHK DRA LI D FALA A +L +Y +AL++ Y+ + ++LPW+ + +I + I +Y G+V + + G+ D D + + L+ ++ AC G L N++ LF+ W+ +P + R LVY YG++NSG E +W+ ++ +A EK KLLYGLA+++ L RYLD I+ QD V Y++ +N G+ +AWN+++ NWD + + + GRIV ++ F T +L +M +F A K P+ G++ +Q ET+K+ IEWL ++ I +W
Sbjct: 398 QWFGNIVTMDWWEDLWLNEGFASFFEFLGVNHAETDWQMRDQMLLEDVLPVQEDDSLMSSHPIIVTVTTPDEITSVFDGISYSKGSSILRMLEDWIKPENFQKGCQMYLEKYQFKNAKTSDFWAALEEASRLP-----VKEVMDTWTRQMGYPVLNV----NGVKNITQKRFLLD--PRANPSQPPSDLGYTWNIPVKWTE---DNITSSVLFNRS------EKEGITLNSSNPSGNAFLKINPDHIGFYRVNYEVATWDSIATALSLNHKTFSSADRASLIDDAFALARA-QLLDYKVALNLTKYLKREENFLPWQRVISAVTYIISMFEDDKELYPMIEEYFQGQVKPIADSLGWNDAGDHVTKLLRSSVLGFACKMGDREALNNASSLFEQWLNGTVSLPVNLRLLVYRYGMQNSGNEISWNYTLEQYQKTSLAQEKEKLLYGLASVKNVTLLSRYLDLLKDTNLIKTQDVFTVIRYIS-YNSYGKNMAWNWIQLNWDYLVNRYTLNNRNLGRIV-TIAEPFNTELQLWQMESFFA-KYPQAGAGEKPREQVLETVKNNIEWLKQHRNTIREWF 950 The following BLAST results are available for this feature:
BLAST of TCONS_00035791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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