TCONS_00035787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035787
Unique NameTCONS_00035787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035787 ID=TCONS_00035787|Name=TCONS_00035787|organism=Clytia hemisphaerica|type=transcript|length=509bp
CTCCAGTGAAGAAATGACTCACCCCAGGCAATTGCAGTTGAGTGATCTCA
ACCCCAGtgagaaattgaaataaaagctATCCACCCCGGTGAAATTTTAT
ATAACCCAGGCTACCCGGTCAAAAAGCACACTTGCACTTGGCAAAAAAAC
AGGTAGAAAAGTGTATATATCAACTAGAAAATCCCCAAAAAAACTAGTGT
CACTAAAAAATGTACGTTTTATAGGTCTGGAGATTTAGACCGCCATATGA
GTAATCCCCAAGAACCTAATCGAAATTCACACCAATCAAAAAAGGCTCAA
ATTTCCACCCCAGTGGaaagtttctttaaaaatcttccCGCAGCCGATTT
TAATCTTTTATCAGACTCACTCCGGTGAAGTTTTATTTTCCACCAGGTCA
TGGGAACAGGGGTGTTTTATACGAAATAATAAATAGATATCCATCTGACC
TGTGTTAATTTGTTGTGTTTTGGATTTAATTCCCAGGCCTCCTCACTAGT
GCCGTTCCC
Run BLAST on NCBI

transcript from alignment at sc0001362:4794..5302

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035787 ID=TCONS_00035787|Name=TCONS_00035787|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0001362:4794..5302 (Clytia hemisphaerica)
GGGAACGGCACTAGTGAGGAGGCCTGGGAATTAAATCCAAAACACAACAA
ATTAACACAGGTCAGATGGATATCTATTTATTATTTCGTATAAAACACCC
CTGTTCCCATGACCTGGTGGAAAATAAAACTTCACCGGAGTGAGTCTGAT
AAAAGATTAAAATCGGCTGCGggaagatttttaaagaaactttCCACTGG
GGTGGAAATTTGAGCCTTTTTTGATTGGTGTGAATTTCGATTAGGTTCTT
GGGGATTACTCATATGGCGGTCTAAATCTCCAGACCTATAAAACGTACAT
TTTTTAGTGACACTAGTTTTTTTGGGGATTTTCTAGTTGATATATACACT
TTTCTACCTGTTTTTTTGCCAAGTGCAAGTGTGCTTTTTGACCGGGTAGC
CTGGGTTATATAAAATTTCACCGGGGTGGATagcttttatttcaatttct
caCTGGGGTTGAGATCACTCAACTGCAATTGCCTGGGGTGAGTCATTTCT
TCACTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020997XLOC_020997Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035787-exon-sc0001362-1491911889:4794..5302TCONS_00035787-exon-sc0001362-1491911889:4794..5302Clytia hemisphaericaexon
TCONS_00035787-exon-sc0001362-1510915933:4794..5302TCONS_00035787-exon-sc0001362-1510915933:4794..5302Clytia hemisphaericaexon
TCONS_00035787-exon-sc0001362-1575043694:4794..5302TCONS_00035787-exon-sc0001362-1575043694:4794..5302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001362supercontigsc0001362:4794..5302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.473037	0.576606	0.401697	0.785996	0.797395	0.756135	0.152041	0.569355	0.199309	0.370315	0.119812	0.15752	0.550553	0.816793	0.268606	0.144128	0	0.181986	0	0.526195	0.11434	0	0	0	0.888787	1.69976	0	0	0.131258	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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