TCONS_00035780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035780
Unique NameTCONS_00035780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035780 ID=TCONS_00035780|Name=TCONS_00035780|organism=Clytia hemisphaerica|type=transcript|length=1471bp
ATCAACAACGGATCGGTAAGTGAGTGATCGACAGCGAATCAGTGAGTGAT
CGACAACGGATCGGTGAGTGAGTGATCGACAACGGATCGGTGAGTGATCG
ACAACGAATCGGTGAGTGAGTGATCGACAACAGATCGGTGAGTGAGTGAT
CGACAATGGATCGGTGAGTGAGTGATCGACAACAGATCAATGAGTGAGTG
ATCGACAACGGATCGGTGAGTGATCGGCAACGGATCGGTGAACAATAGTG
ATCGACAACGGATCGGTAAGTGAGTGATCGACAGCGAATCAGTGAGTGAT
CGACAACGGATCGGTGAGTGAGTGATCGACAACGGATCGGTGAGTGAGTG
ATCGACAACGGATCGGTGAGTGATCGACAACGGATCGGTGAGTAAATGAT
CGGCAACGGATCGGTGAGTAAATGATCGACAACGGATCGGTGAGTGATCG
ACAATGGATCAGTGAGTGAGTGATCGACAGTGGATCGGTGAGTGAGTGAT
CGACAACGGATCGGTGAGTGAGTGATCGACAACGGATCGGTGAGTAAATG
ATCGACAATGGATCGATGAACAAGTGATCGACAATGGATCAGTGTGAGAT
CTGATCAACTTCGAATTGCGGATTAAGATTTAGTCGACTTGGAATCATGA
ATGAGACTTGATCAACTATGAATCGTGGATGAGATTTAGTCAACTTCGAA
TCGTGGATTAGATTTGGTCAATTTCGAATCGTAGATGAGATTTGATCGAC
TTCAAATCCTAGATGAGATCTGATCAACTTCGAATCGTAGATGCAATTTG
AGCGACTTCGAATCCTTCATGGGATCTGATCAACTTGGAATCGTGGATGA
GATTTAGTCGACTTGGAATCGTGGATGAGACTTGATAAACTACGAATCGT
GGATGAGATTTGATCAACTACGAATCGTGGATGAGATTCGGTCAACTTCG
AATCGTGGATTAGATTTGGTCAACTACGAATCGTGGATTAGATTTGGTCA
ACTACGAATCGTGGACGAGATTTGGTCAACTACAAATCGTGGATGAGATT
TGGTCAACGTCGAATCGTGGATGAGATTTGGTCAACGTCGAATCGTTGAT
TAGATTTGGTCAACGTCGAATCGTGGGTGAGATTTGGTCAACGTCAAATC
GTGGATTAGATTTAGTCAACTTCGAATCGTGGATGGGATTAGATCAACTA
CGAATCGTGGATGAGATTTGGTCAACGTCGAATCGTGGATTAGATTTGGT
CAACGTCGAATCGTGGATTAGATTTGATCAACTACGAATCGTGGATGAGA
TTTGGTCGGCATATGATTCCTCATGCGATTCGAACTTTGACTTTGAATTG
TGAATGAAATTGGATTACCTTCGAATTGTTGATGCCATTTCAATGACTTT
GAATCGTGATTGAGATGAACAAACTGTAGATTGAAGATGTGATGGTTTGA
ACAACGAATCACGGATGATAG
Run BLAST on NCBI

transcript from alignment at sc0001362:21995..23549-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035780 ID=TCONS_00035780|Name=TCONS_00035780|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at sc0001362:21995..23549- (Clytia hemisphaerica)
ATCAACAACGGATCGGTAAGTGAGTGATCGACAGCGAATCAGTGAGTGAT
CGACAACGGATCGGTGAGTGAGTGATCGACAACGGATCGGTGAGTGATCG
ACAACGAATCGGTGAGTGAGTGATCGACAACAGATCGGTGAGTGAGTGAT
CGACAATGGATCGGTGAGTGAGTGATCGACAACAGATCAATGAGTGAGTG
ATCGACAACGGATCGGTGAGTGATCGGCAACGGATCGGTGAACAATAGTG
ATCGACAACGGATCGGTAAGTGAGTGATCGACAGCGAATCAGTGAGTGAT
CGACAACGGATCGGTGAGTGAGTGATCGACAACGGATCGGTGAGTGAGTG
ATCGACAACGGATCGGTGAGTGATCGACAACGGATCGGTGAGTAAATGAT
CGGCAACGGATCGGTGAGTAAATGATCGACAACGGATCGGTGAGTGATCG
ACAATGGATCAGTGAGTGAGTGATCGACAGTGGATCGGTGAGTGAGTGAT
CGACAACGGATCGGTGAGTGAGTGATCGACAACGGATCGGTGAGTAAATG
ATCGACAATGGATCGATGAACAAGTGATCGACAATGGATCAGTGTGAGAT
CTGATCAACTTCGAATTGCGGATTAAGATTTAGTCGACTTGGAATCATGA
ATGAGACTTGATCAACTATGAATCGTGGATGAGATTTAGTCAACTTCGAA
TCGTGGATTAGATTTGGTCAATTTCGAATCGTAGATGAGATTTGATCGAC
TTCAAATCCTAGATGAGATCTGATCAACTTCGAATCGTAGATGCAATTTG
AGCGACTTCGAATCCTTCATGGGATCTGATCAACTTGGAATCGTGGATGA
GATTTAGTCGACTTGGAATCGTGGATGAGACTTGATAAACTACGAATCGT
GGATGAGATTTGATCAACTACGAATCGTGGATGAGATTCGGTCAACTTCG
AATCGTGGATTAGATTTGGTCAACTACGAATCGTGGATTAGATTTGGTCA
ACTACGAATCGTGGACGAGATTTGGTCAACTACAAATCGTGGATGAGATT
TGGTCAACGTCGAATCGTGGATGAGATTTGGTCAACGTCGAATCGTTGAT
TAGATTTGGTCAACGTCGAATCGTGGGTGAGATTTGGTCAACGTCAAATC
GTGGATTAGATTTAGTCAACTTCGAATCGTGGATGGGATTAGATCAACTA
CGAATCGTGGATGAGATTTGGTCAACGTCGAATCGTGGATTAGATTTGGT
CAACGTCGAATCGTGGATTAGATTTGGTCAACGTCGAATCGTGGGAGAGA
TTTGGTCAACGTCAAATCGTGGATTAGATTTAGTCAACTTCGAATCGTGG
ATGGGATTAGATCAACTACGAATCGTGGATGAGATTTGGTCGGCATATGA
TTCCTCATGCGATTCGAACTTTGACTTTGAATTGTGAATGAAATTGGATT
ACCTTCGAATTGTTGATGCCATTTCAATGACTTTGAATCGTGATTGAGAT
GAACAAACTGTAGATTGAAGATGTGATGGTTTGAACAACGAATCACGGAT
GATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020994XLOC_020994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035780-exon-sc0001362-1575043694:22274..23549TCONS_00035780-exon-sc0001362-1575043694:22274..23549Clytia hemisphaericaexon
TCONS_00035780-exon-sc0001362-1575043694:21995..22189TCONS_00035780-exon-sc0001362-1575043694:21995..22189Clytia hemisphaericaexon
TCONS_00035780-exon-sc0001362-1510915933:22274..23549TCONS_00035780-exon-sc0001362-1510915933:22274..23549Clytia hemisphaericaexon
TCONS_00035780-exon-sc0001362-1510915933:21995..22189TCONS_00035780-exon-sc0001362-1510915933:21995..22189Clytia hemisphaericaexon
TCONS_00035780-exon-sc0001362-1491911889:22274..23549TCONS_00035780-exon-sc0001362-1491911889:22274..23549Clytia hemisphaericaexon
TCONS_00035780-exon-sc0001362-1491911889:21995..22189TCONS_00035780-exon-sc0001362-1491911889:21995..22189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001362supercontigsc0001362:21995..23549 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.428523	0.218738	0.22188	0.0934227	0.0996953	0.206984	0	0.0814404	0.210498	0	0	0	0.0323997	0.13761	0.0329223	0	0.0334226	0	0.210762	0.232014	0	0.0397732	0	0.0550409	0	0.0830867	0.163725	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top