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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035777 ID=TCONS_00035777|Name=TCONS_00035777|organism=Clytia hemisphaerica|type=transcript|length=1745bp
ATTGTGTACTGTTTTTGAGAGCTACCTTTCAGTTTCTGAATTTGTTTCCA
ATAAGATCTAGGTTTTGTGTTTTTTATCTTCTCAACGTTAATGAAGTGGT
CTACGGTAGATTTGCGTGTTTAACTAGGGATCTGAATGTTTTACGTGTAT
GTCAAGCTTGAAGGGTCTTTCGTAAAGTTGTCGGTTCGTAGAATAtcatt
ccgaaaaaaaattactatTTTGTGATTTAGTTGTAGTggttaaatatttg
aaaatttggaaccCAAGAAGGCTCTAAATGGGAATTTAGATTTAAACATG
CTAGATTTCTTAAATTCTTTTAGGTCCCAGTAGAGTTTTCAGAGGACAAA
ACTGCAATTATCAAACGAATAGTTTACGATCAGGAAAATGACACTCTTGT
GGGGTTTTGTGGAGTTGAATGTGACCAACATGAATGCAAGCAAAGCTTTG
CAATTCGTGTTGGAAACGGAGAGGATGGCTATAAAACGATCGTCAAAGCT
TTCGAAGGAAATCGAATTGGTACAAATGCTCGATGCATAATGTTGAATCC
TATATATCCTGgttttccaaaaattgcaatttttacTATGGCAACTTGCA
ATTGTTTTAATAACGACTTGGTTCGTCAACAGTACAACTACAACAAATTG
ATGTACGAAAAGCACATCGAGAGTGTTCTTGGTCCTGCTATAGGGATTAG
TTCTGATGGAGATTCTCGACGACGAAAGCTCTTCATGGACCTTTCAACAT
CAACATCTGACTCTTGTTTTTACTCGATACCAAAGGAATATGGCTTCGTA
TTTACAGGAAAAGTAGAAGGGGATAAAGTGACAGACCTTTGCGACCAAGA
CTATATTCGCAATCACAAAAAGCAAATCGGAAATTATCTTATCCACTTAA
ATCATATCAGCGGAGTATATCGTTTTCGAGTGTCTTATCTTTCATAACCC
TTAAGATTagacatatattttttattgaattcGTAGTTGTGATATTTTTG
TTAAATACTTTCTCTTAAGGTGTCAAATCTGCTTTCATATAGTTTTTCCT
CTTCATAATCTTGAAACGTTTGGTCGCTTGGCAATTTAGTGCCTGAATTT
AGATaagaattttaaacaaaatccaTAGAGTCATTATATCACTTTTGACA
GTAATCATCTTATTTATGAATAGACTACTTAATTTTCTTAGCTAATTTTG
CGGTTTCCGTTTTTAGGTCTACGCGTCTTTTCCCGTTGAAGAACATGGAT
TACGAAAAACTGATATCAACAGAGACGATAGACAGAATTGGCGATCCGCT
CAAAAACTATCATTCAATAAGATACGAGAATCGTTCAGCGATCTTAAGAC
AGAATCCAACAAAGGAACGGCCGTATACCTAAAGATTCTTTGGTATTACG
TTGAGATTTTTTGTAGTGATGTAACCTCACTTGTTGACCGTATCAAATAC
TGTGCGACAGTTTGCTTCTTTTTGGgtATTAGGCGCAATtgggtcaaaaa
caacaaatcaactCGCTTGGACAAAAATTTCATATCCAGACAATCGTACA
TCGATACATTGACACTTCTTGCCACTTCGCAACTTCATTTATCGTCCTTT
GCCGAAATAAACTCGATGGTATCGAATGTCACTTCTCTGAGTCAGGAACG
GATTGTTGTGAAAATTACTTCAGTTGCCTTGGCCAACGGATAGGCAATAA
ACACAATTACACATATCAAGACATGACTAGAAACCGTGATCACTG Run BLAST on NCBI transcript from alignment at sc0001362:46520..48621+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035777 ID=TCONS_00035777|Name=TCONS_00035777|organism=Clytia hemisphaerica|type=transcript|length=2102bp|location=Sequence derived from alignment at sc0001362:46520..48621+ (Clytia hemisphaerica)
ATTGTGTACTGTTTTTGAGAGCTACCTTTCAGTTTCTGAATTTGTTTCCA
ATAAGATCTAGGTTTTGTGTTTTTTATCTTCTCAACGTTAATGAAGTGGT
CTACGGTAGATTTGCGTGTTTAACTAGGGATCTGAATGTTTTACGTGTAT
GTCAAGCTTGAAGGGTCTTTCGTAAAGTTGTCGGTTCGTAGAATAtcatt
ccgaaaaaaaattactatTTTGTGATTTAGTTGTAGTggttaaatatttg
aaaatttggaaccCAAGAAGGCTCTAAATGGGAATTTAGATTTAAACATG
CTAGATTTCTTAAATTCTTTTAGGTCCCAGTAGAGTTTTCAGAGGACAAA
ACTGCAATTATCAAACGAATAGTTTACGATCAGGAAAATGACACTCTTGT
GGGGTTTTGTGGAGTTGAATGTGACCAACATGAATGCAAGCAAAGCTTTG
CAATTCGTGTTGGAAACGGAGAGGATGGCTATAAAACGATCGTCAAAGCT
TTCGAAGGAAATCGAATTGGTACAAATGCTCGATGCATAATGTTGAATCC
TATATATCCTGgttttccaaaaattgcaatttttacTATGGCAACTTGCA
ATTGTTTTAATAACGACTTGGTTCGTCAACAGTACAACTACAACAAATTG
ATGTACGAAAAGCACATCGAGAGTGTTCTTGGTCCTGCTATAGGGATTAG
TTCTGATGGAGATTCTCGACGACGAAAGCTCTTCATGGACCTTTCAACAT
CAACATCTGACTCTTGTTTTTACTCGATACCAAAGGAATATGGCTTCGTA
TTTACAGGAAAAGTAGAAGGGGATAAAGTGACAGACCTTTGCGACCAAGA
CTATATTCGCAATCACAAAAAGCAAATCGGAAATTATCTTATCCACTTAA
ATCATATCAGCGGAGTATATCGTTTTCGAGTGTCTTATCTTTCATAACCC
TTAAGATTagacatatattttttattgaattcGTAGTTGTGATATTTTTG
TTAAATACTTTCTCTTAAGGTGTCAAATCTGCTTTCATATAGTTTTTCCT
CTTCATAATCTTGAAACGTTTGGTCGCTTGGCAATTTAGTGCCTGAATTT
AGATaagaattttaaacaaaatccaTAGAGTCATTATATCACTTTTGACA
GTAATCATCTTATTTATGAATAGACTACTTAATTTTCTTAGCTAATTTTG
CGGTTTCCGTTTTTAGGTCTACGCGTCTTTTCCCGTTGAAGAACATGGAT
TACGAAAAACTGATATCAACAGAGACGATAGACAGAATTGGCGATCCGCT
CAAAAACTATCATTCAATAAGATACGAGAATCGTTCAGCGATCTTAAGAC
AGAATCCAACAAAGGAACGGCCGTATACCTAAAGATTCTTTGGTATTACG
TTGAGATTTTTTGTAGTGATGTAACCTCACTTGTTGACCGTATCAAATAC
TGTGCGACAGTTTGCTTCTTTTTGGGTATTTATCTTCTAATTACTACTTC
TCTATATTGTAGTAAATTATATATTATGCTGCtttgccacccaaatctcc
tgagtgaatacaGTTGGATAGAAATATGTAATATATACAGGGCCTGCGCC
ATGAATTTCAAAGTGAGGGGGGCAAAATTTATAGAATCTAAGGAGAcgca
ttcattttttttttgtgcaaaaaagtGGAGGGGCCATGGCGCCCCGGTCC
CCCCCCCTGGTGGCGCGGTTCCTATTATATTGCCGCTTCAAATAAGAAAC
AGTCTTCTGTTTTAAAACCCAGTATGTTTTCTTGTGCTCCAAAAATAAAT
TCTGAAAAGTAAtttaaggatgatttttttaggtATTAGGCGCAATtggg
tcaaaaacaacaaatcaactCGCTTGGACAAAAATTTCATATCCAGACAA
TCGTACATCGATACATTGACACTTCTTGCCACTTCGCAACTTCATTTATC
GTCCTTTGCCGAAATAAACTCGATGGTATCGAATGTCACTTCTCTGAGTC
AGGAACGGATTGTTGTGAAAATTACTTCAGTTGCCTTGGCCAACGGATAG
GCAATAAACACAATTACACATATCAAGACATGACTAGAAACCGTGATCAC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035777-exon-sc0001362-1491911889:46520..47994 | TCONS_00035777-exon-sc0001362-1491911889:46520..47994 | Clytia hemisphaerica | exon |
| TCONS_00035777-exon-sc0001362-1510915933:46520..47994 | TCONS_00035777-exon-sc0001362-1510915933:46520..47994 | Clytia hemisphaerica | exon |
| TCONS_00035777-exon-sc0001362-1575043694:46520..47994 | TCONS_00035777-exon-sc0001362-1575043694:46520..47994 | Clytia hemisphaerica | exon |
| TCONS_00035777-exon-sc0001362-1491911889:48352..48621 | TCONS_00035777-exon-sc0001362-1491911889:48352..48621 | Clytia hemisphaerica | exon |
| TCONS_00035777-exon-sc0001362-1510915933:48352..48621 | TCONS_00035777-exon-sc0001362-1510915933:48352..48621 | Clytia hemisphaerica | exon |
| TCONS_00035777-exon-sc0001362-1575043694:48352..48621 | TCONS_00035777-exon-sc0001362-1575043694:48352..48621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001362 | supercontig | sc0001362:46520..48621 + |
Blast
The following BLAST results are available for this feature:
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