TCONS_00035775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035775
Unique NameTCONS_00035775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2112

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035775 ID=TCONS_00035775|Name=TCONS_00035775|organism=Clytia hemisphaerica|type=transcript|length=2112bp
CTATCATCCGTGATTCGTTGTTCAAACCATCACATCTTCAATCTACAGTT
TGTTCATCTCAATCACGATTCAAAGTCATTGAAATGGCATCAACAATTCG
AAGGTAATCCAATTTCATTCACAATTCAAAGTCAAAGTTCGAATCGCATG
AGGAATCATATGCCGACCAAATCTCATCCACGATTCGTAGTTGATCTAAT
CCCATCCACGATTCGAAGTTGACTAAATCTAATCCACGATTTGACGTTGA
CCAAATCTCTCCCACGATTCGACGTTGACCAAATCTAATCCACGATTCGA
CGTTGACCAAATCTAATCCACGATTCGACGTTGACCAAATCTCATCCACG
ATTCGTAGTTGATCTAATCCCATCCACGATTCGAAGTTGACTAAATCTAA
TCCACGATTTGACGTTGACCAAATCTCACCCACGATTCGACGTTGACCAA
ATCTAATCAACGATTCGACGTTGACCAAATCTCATCCACGATTCGACGTT
GACCAAATCTCATCCACGATTTGTAGTTGACCAAATCTCGTCCACGATTC
GTAGTTGACCAAATCTAATCCACGATTCGTAGTTGACCAAATCTAATCCA
CGATTCGAAGTTGACCGAATCTCATCCACGATTCGTAGTTGATCAAATCT
CATCCACGATTCGTAGTTTATCAAGTCTCATCCACGATTCCAAGTCGACT
AAATCTCATCCACGATTCCAAGTTGATCAGATCCCATGAAGGATTCGAAG
TCGCTCAAATTGCATCTACGATTCGAAGTTGATCAGATCTCATCTAGGAT
TTGAAGTCGATCAAATCTCATCTACGATTCGAAATTGACCAAATCTAATC
CACGATTCGAAGTTGACTAAATCTCATCCACGATTCATAGTTGATCAAGT
CTCATTCATGATTCCAAGTCGACTAAATCTTAATCCGCAATTCGAAGTTG
ATCAGATCTCACACTGATCCATTGTCGATCACTTGTTCATCGATCCATTG
TCGATCATTTACTCACCGATCCGTTGTCGATCACTCACTCACCGATCCGT
TGTCGATCACTCACTCACCGATCCACTGTCGATCACTCACTCACTGATCC
ATTGTCGATCACTCACCGATCCGTTGTCGATCATTTACTCACCGATCCGT
TGCCGATCATTTACTCACCGATCCGTTGTCGATCACTCACCGATCCGTTG
TCGATCACTCACTCACCGATCCGTTGTCGATCACTCACTCACCGATCCGT
TGTCGATCACTCACTGATTCGCTGTCGATCACTCACTTACCGATCCGTTG
TCGATCACTATTGTTCACCGATCCGTTGCCGATCACTCACCGATCCGTTG
TCGATCACTCACTCTCACCGATCCGTTGTCGATCACTCACTCTTACCGAT
CCGTTGTCGATCACTCACCGATCCGTTGTCAATCACTCACTCGCCGATCC
GTTGTCGATCACTCACTCTTACCGATCCGCTGTCGATCATTCGCTCATCG
ATCACCCATTGTTCTGATTTGTTGTCGATCAACAACAGAATTGTGATCAT
TCTATCAATATCGTCTACTGTAACTCGAATACTAATCATGGCAGACTATC
ACTCCAAAGCTACCCTACTACTGGAAAAGATCAAGTACACACTAAGAGTC
GTGGACATATACCAAAGCTCAAAAGAAGAGCTCACCAACATTATCAAAAA
GCTGAGAAATGACCGTCTTACCTTACGACAATATCGATCAAACTTGTCTA
CCACCGATGATGAACATATTCAGCTCACTAACCATATTAACGATTTCATC
CCATCCatcaaaaagttcatcatcCCAGCCAGCAACCATCTTCGTTTATT
GAACCAAGCTAGCAATAACATAGAACTTAACGCTATCGAGCAAAACGTAC
AACAGACCTTGGACAAAATTGAAAAGGTTGTGTCAAAACTCAATGAAACA
CTTACAAGAGATTTGAGTTCATTAAATGGTTCTCAAATTCTTATTCTTAA
ATCTGAGGCACCAAAATTGTATCCTGAAATAAATGCAATGGAAGAACAAT
TGCTGAAAGTACCAACTACTGTCAATACATCACTTTTGCAACATATGGAG
AATGTCAATAGA
Run BLAST on NCBI

protein sequence of TCONS_00035775-protein

>TCONS_00035775-protein ID=TCONS_00035775-protein|Name=TCONS_00035775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MADYHSKATLLLEKIKYTLRVVDIYQSSKEELTNIIKKLRNDRLTLRQYR
SNLSTTDDEHIQLTNHINDFIPSIKKFIIPASNHLRLLNQASNNIELNAI
EQNVQQTLDKIEKVVSKLNETLTRDLSSLNGSQILILKSEAPKLYPEINA
MEEQLLKVPTTVNTSLLQHMENVNR
Run BLAST on NCBI

transcript from alignment at sc0001362:21995..24896+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035775 ID=TCONS_00035775|Name=TCONS_00035775|organism=Clytia hemisphaerica|type=transcript|length=2902bp|location=Sequence derived from alignment at sc0001362:21995..24896+ (Clytia hemisphaerica)
CTATCATCCGTGATTCGTTGTTCAAACCATCACATCTTCAATCTACAGTT
TGTTCATCTCAATCACGATTCAAAGTCATTGAAATGGCATCAACAATTCG
AAGGTAATCCAATTTCATTCACAATTCAAAGTCAAAGTTCGAATCGCATG
AGGAATCATATGCCGACCAAATCTCATCCACGATTCGTAGTTGATCTAAT
CCCATCCACGATTCGAAGTTGACTAAATCTAATCCACGATTTGACGTTGA
CCAAATCTCTCCCACGATTCGACGTTGACCAAATCTAATCCACGATTCGA
CGTTGACCAAATCTAATCCACGATTCGACGTTGACCAAATCTCATCCACG
ATTCGTAGTTGATCTAATCCCATCCACGATTCGAAGTTGACTAAATCTAA
TCCACGATTTGACGTTGACCAAATCTCACCCACGATTCGACGTTGACCAA
ATCTAATCAACGATTCGACGTTGACCAAATCTCATCCACGATTCGACGTT
GACCAAATCTCATCCACGATTTGTAGTTGACCAAATCTCGTCCACGATTC
GTAGTTGACCAAATCTAATCCACGATTCGTAGTTGACCAAATCTAATCCA
CGATTCGAAGTTGACCGAATCTCATCCACGATTCGTAGTTGATCAAATCT
CATCCACGATTCGTAGTTTATCAAGTCTCATCCACGATTCCAAGTCGACT
AAATCTCATCCACGATTCCAAGTTGATCAGATCCCATGAAGGATTCGAAG
TCGCTCAAATTGCATCTACGATTCGAAGTTGATCAGATCTCATCTAGGAT
TTGAAGTCGATCAAATCTCATCTACGATTCGAAATTGACCAAATCTAATC
CACGATTCGAAGTTGACTAAATCTCATCCACGATTCATAGTTGATCAAGT
CTCATTCATGATTCCAAGTCGACTAAATCTTAATCCGCAATTCGAAGTTG
ATCAGATCTCACACTGATCCATTGTCGATCACTTGTTCATCGATCCATTG
TCGATCATTTACTCACCGATCCGTTGTCGATCACTCACTCACCGATCCGT
TGTCGATCACTCACTCACCGATCCACTGTCGATCACTCACTCACTGATCC
ATTGTCGATCACTCACCGATCCGTTGTCGATCATTTACTCACCGATCCGT
TGCCGATCATTTACTCACCGATCCGTTGTCGATCACTCACCGATCCGTTG
TCGATCACTCACTCACCGATCCGTTGTCGATCACTCACTCACCGATCCGT
TGTCGATCACTCACTGATTCGCTGTCGATCACTCACTTACCGATCCGTTG
TCGATCACTATTGTTCACCGATCCGTTGCCGATCACTCACCGATCCGTTG
TCGATCACTCACTCATTGATCTGTTGTCGATCACTCACTCACCGATCCAT
TGTCGATCACTCACTCACCGATCTGTTGTCGATCACTCACTCACCGATTC
GTTGTCGATCACTCACCGATCCGTTGTCGATCACTCACTCACCGATCCGT
TGTCGATCACTCACTGATTCGCTGTCGATCACTCACTTACCGATCCGTTG
TTGATCACTATTGTTCACAGATCCGTTGCCGATCACTCACCGATCCGTTG
TCGATCACGCACTGATTGATCCGGTGTCGATCACTCACTCACCGATCCGT
TGTCGATCACTCACTCACCGATCCGTTGTCGATCACTCACTCACCGATCC
GTTGTCGATCACTCACTGATTCGCTGTCGATCACTCACTTACCGATCCGT
TGCCGATCACTATTGTTCACCGATCCGTTGCCGATTACTCACCGATCCGT
TGTCGATCACTCTCTCATTGATCCGTTGTCGATCACTTACTCACCGATCC
GCTGTCGATCACTCACTCGTACCGATCCGCTGTCGATCACTCCCCGATCC
GTTGTCGATCACTATTGTTCACCGATCCGTTGCCGATTACTCACCGATCC
GTTGTCGATCACTCTCTCATTGATCCGTTGTCGATCACTTACTCACCGAT
CCGCTGTCGATCACTCACTCGTACCGATCCGCTGTCGATCACTCACCGAT
CCGTTGTCgatcactcactcactcaccgATCCGCTGTCGATCACACGCTC
ACTCACCGATCCGTTGTTGATCACTCACTCACCGATCCGTTGTTGATCAC
TCACTCACCGATCCGTTGTCGATCACTCACTCTTACCGATCCGTTGTCGA
TCACTCACCGATCCGTTGTCAATCACTCACTCGCCGATCCGTTGTCGATC
ACTCACTCTTACCGATCCGCTGTCGATCATTCGCTCATCGATCACCCATT
GTTCTGATTTGTTGTCGATCAACAACAGAATTGTGATCATTCTATCAATA
TCGTCTACTGTAACTCGAATACTAATCATGGCAGACTATCACTCCAAAGC
TACCCTACTACTGGAAAAGATCAAGTACACACTAAGAGTCGTGGACATAT
ACCAAAGCTCAAAAGAAGAGCTCACCAACATTATCAAAAAGCTGAGAAAT
GACCGTCTTACCTTACGACAATATCGATCAAACTTGTCTACCACCGATGA
TGAACATATTCAGCTCACTAACCATATTAACGATTTCATCCCATCCatca
aaaagttcatcatcCCAGCCAGCAACCATCTTCGTTTATTGAACCAAGCT
AGCAATAACATAGAACTTAACGCTATCGAGCAAAACGTACAACAGACCTT
GGACAAAATTGAAAAGGTTGTGTCAAAACTCAATGAAACACTTACAAGAG
ATTTGAGTTCATTAAATGGTTCTCAAATTCTTATTCTTAAATCTGAGGCA
CCAAAATTGTATCCTGAAATAAATGCAATGGAAGAACAATTGCTGAAAGT
ACCAACTACTGTCAATACATCACTTTTGCAACATATGGAGAATGTCAATA
GA

Coding sequence (CDS) from alignment at sc0001362:21995..24896+

>TCONS_00035775 ID=TCONS_00035775|Name=TCONS_00035775|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0001362:21995..24896+ (Clytia hemisphaerica)
ATGGCAGACTATCACTCCAAAGCTACCCTACTACTGGAAAAGATCAAGTA
CACACTAAGAGTCGTGGACATATACCAAAGCTCAAAAGAAGAGCTCACCA
ACATTATCAAAAAGCTGAGAAATGACCGTCTTACCTTACGACAATATCGA
TCAAACTTGTCTACCACCGATGATGAACATATTCAGCTCACTAACCATAT
TAACGATTTCATCCCATCCatcaaaaagttcatcatcCCAGCCAGCAACC
ATCTTCGTTTATTGAACCAAGCTAGCAATAACATAGAACTTAACGCTATC
GAGCAAAACGTACAACAGACCTTGGACAAAATTGAAAAGGTTGTGTCAAA
ACTCAATGAAACACTTACAAGAGATTTGAGTTCATTAAATGGTTCTCAAA
TTCTTATTCTTAAATCTGAGGCACCAAAATTGTATCCTGAAATAAATGCA
ATGGAAGAACAATTGCTGAAAGTACCAACTACTGTCAATACATCACTTTT
GCAACATATGGAGAATGTCAATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020989XLOC_020989Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035775-proteinTCONS_00035775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035775-exon-sc0001362-1491911889:21995..23358TCONS_00035775-exon-sc0001362-1491911889:21995..23358Clytia hemisphaericaexon
TCONS_00035775-exon-sc0001362-1510915933:21995..23358TCONS_00035775-exon-sc0001362-1510915933:21995..23358Clytia hemisphaericaexon
TCONS_00035775-exon-sc0001362-1575043694:21995..23358TCONS_00035775-exon-sc0001362-1575043694:21995..23358Clytia hemisphaericaexon
TCONS_00035775-exon-sc0001362-1491911889:24149..24896TCONS_00035775-exon-sc0001362-1491911889:24149..24896Clytia hemisphaericaexon
TCONS_00035775-exon-sc0001362-1510915933:24149..24896TCONS_00035775-exon-sc0001362-1510915933:24149..24896Clytia hemisphaericaexon
TCONS_00035775-exon-sc0001362-1575043694:24149..24896TCONS_00035775-exon-sc0001362-1575043694:24149..24896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001362supercontigsc0001362:21995..24896 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.458903	0.385952	0.375628	0.0822549	1.0626	0.587238	0.16778	0.32377	0.0646371	0.14525	0.169074	0.074497	0.232839	1.02132	0.0628563	0.124966	0.0810924	0.115597	0.25729	0.310813	0	0	0.036255	0.0703027	0.203695	0.275661	0.0548313	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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