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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035773 ID=TCONS_00035773|Name=TCONS_00035773|organism=Clytia hemisphaerica|type=transcript|length=414bp
AGAAGCTATTTTTCCATCTCTTTTTACACTCCTTCTGGCTTCTAGCCTAT
CTCTTTCCCAACAcgcatttttttcatcattctGCTGGAACAGTGTCAAG
GAAAAAGCCGCGGCCTTCAGAGGTACAGGCAAGGCAACCCTGGGCTGACT
GCAACGCGTCTAATTGCGGCTTATTTGAGCTGCTTCCGATTTCGTATGAT
CTTTGAATCGAACaagttttcaaaatggtagctctaAGCTGCGGAAAAAC
TTGAATTCAAAAGTGAACAGTGCAAGCAAGAGCAAGTTGCAAGTGTGTGC
ATTAATAATTTGCAGTTTGAACTTGAATACATTTGCCAGTCCACCTCTAC
ATTTATAGCAGCATGGGAGCAGTGAAGAAGTATGCGTATCCTAAATATGT
TTGGTCACCTNTTA Run BLAST on NCBI transcript from alignment at sc0001362:11456..15484+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035773 ID=TCONS_00035773|Name=TCONS_00035773|organism=Clytia hemisphaerica|type=transcript|length=4029bp|location=Sequence derived from alignment at sc0001362:11456..15484+ (Clytia hemisphaerica)
AGAAGCTATTTTTCCATCTCTTTTTACACTCCTTCTGGCTTCTAGCCTAT
CTCTTTCCCAACAcgcatttttttcatcattctGCTGGAACAGTGTCAAG
GAAAAAGCCGCGGCCTTCAGAGGTACAGGCAAGGCAACCCTGGGCTGACT
GCAACGCGTCTAATTGCGGCTTATTTGAGCTGCTTCCGATTTCGTATGAT
CTTTGAATCGAACaagttttcaaaatggtagctctaAGCTGCGGAAAAAC
TTGAATTCAAAAGTGAACAGTGCAAGCAAGAGCAAGTTGCAAGTGTGTGC
ATTAATAATTTGCAGTTTGAACTTGAATACATTTGCCAGTCCACCTCTAC
ATTTATAGCAGCATGGTAAGTTTATCTCGTGTGTGCAAGATTTACGAGAG
TATTTAGAAAGAGAAAGATCAGTGTACCTTTACGGCCAAATGACTTTTTA
GAGTTTCGCCCCCTGCATCTCAGCTTTTGAGATTTGCTTCTCACATTCTC
AGATCTAAAACTCTGCTTCTCAAATATGAATCTCACTGCCTCAAAGACTT
GAAACTCTGCACCTCAGATCTGTATCTCTGCTTCTTTCCTTAGCTTTATT
CAGTgcagctggaacctcgatattccaggattagaaaaagctatacctgt
tatcttttttctttaaagatcaACATCAACatctatggcgcgccaaagcg
gaaataaatactatctttcatttcgcgacactatcttccatttcgcgaca
ctatctttcatttcgcggcactatctttcatttcNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtga
aagatagtgtcgcgaaatgaaagatagtgtcgtgaaatgaaagatagtgt
cgcgaaatgagagatagtatttatttccgctttggcgcgccataaacatc
aataaattacacacatttcctctgaaacttttaaaattatctgccattaa
aaatgactttcttgaagccgttccgaaattaaccaatcaggtTGTGTGGC
TATGGGatggagttcttttccgagatttgtaaaatagctaaggcggcaat
cacaaatatcttcatttcgcgtcctcgttgggtcgaaaaagtgagtcggt
cggtcggtcggtcggtcgtaaaaatgNCATCCTCGTTGGGTcgaaaaagt
gagtcggttggtcggtcggtcgtaaaaacttttcgggttttcttaaaatt
ggacCCAGTGAATTTCTTCTTCTCGTCCGACCTtaatcatccatttttgg
agtgtattcttgaaggaaactgccaACCAGCATCCAAAACGACCGCGCGT
TAcgggtggtttcaaattatgacctttgaacactgtaatgataaacaaag
tcaaaatgccgcgaatatgcgctagaaatcgatcgcaaaaaatcggcaat
aataaaatttttgaacgaaggaaatgtcattgacagaaaaagtccgacaa
atttaccgacccaccgactcaattctactcaattttcgagagtcggtcgg
gcgacgcgaaacgaagatatttgtgattgccgcctaaggggtcagtcaca
aatcgattttaagttagaagaacgtcaattgaggcatatgggtgggtggg
ttaaaggttgttgacgtttttcagaaacatcgatttttcattccatgcca
aatattacttcTCGCCATGTTTCTGTTTGATCGCTTCGTTTGgcccgatg
tttatgtcttttctttgtttgacggcccgaacggcccttgaatttttgca
aaTGGCCGTTCTTTCTGTCGCTACATACTACGGAGGTAATTAATTACGgg
aattttgtgaacaagtttagaaattatctccgtttcttttttttttcaaa
tataaactatgcgagccgtagtgaaaatcaagatggctgacgaaacagca
atgaaggcagtttttatcaattttcggGGATATCAAGAcgtgtttgacgt
ttttgggtgtgggtgggtgggtcagcttttaaaacgtcaattgacgttct
tctaacctagaatcgatttgtgactgacccctaaagtcggcaaaaaactt
tttccaggggtttgaagaaaaaacagaactgTTCGAATGAACCGCTAGGG
GTGGtacacagtgaagcacatagggtacttgtgcagacttgtgtcatagt
ttcaaatagtgccctgctgagctgtgtgagtaatctaagatcaaccacgt
atctgtgcaaacaataacgagagattgaccaggagccatcgagcctaggc
taacGAGTGACGGTTCACTAAAActaaaaccttgtttaagatctcttttt
ccacatctctgtaatcactttttggattttcgctgttttcaacctggatt
tttgaaaattccatccttgtttggtttggattttggcttttatcaaccta
gatttaaaaaaattccaaccttgttaaatttggattttggcttttttcaa
ccttgatttttgaaaattccaagccatggaaaatgctaaatttccaacct
tggagaatgtcccacatttccaggttggattttccattggatttgatttt
ttttccaactaaaaaaacttgaaatttccaaccttggaaatcgaaatttt
tttcctgtgtaaaTGTCATCATTGTCATGCTTGTGATCTCCAAATTGGTA
TATAAATCTTTCGCATTATATTCTTTATAGGGAGCAGTGAAGAAGTATGC
GTATCCTAAATATGTTTGGTCACCTNTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035773-exon-sc0001362-1491911889:11456..11820 | TCONS_00035773-exon-sc0001362-1491911889:11456..11820 | Clytia hemisphaerica | exon |
| TCONS_00035773-exon-sc0001362-1510915933:11456..11820 | TCONS_00035773-exon-sc0001362-1510915933:11456..11820 | Clytia hemisphaerica | exon |
| TCONS_00035773-exon-sc0001362-1575043694:11456..11820 | TCONS_00035773-exon-sc0001362-1575043694:11456..11820 | Clytia hemisphaerica | exon |
| TCONS_00035773-exon-sc0001362-1491911889:15436..15484 | TCONS_00035773-exon-sc0001362-1491911889:15436..15484 | Clytia hemisphaerica | exon |
| TCONS_00035773-exon-sc0001362-1510915933:15436..15484 | TCONS_00035773-exon-sc0001362-1510915933:15436..15484 | Clytia hemisphaerica | exon |
| TCONS_00035773-exon-sc0001362-1575043694:15436..15484 | TCONS_00035773-exon-sc0001362-1575043694:15436..15484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001362 | supercontig | sc0001362:11456..15484 + |
Blast
The following BLAST results are available for this feature:
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