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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035772 ID=TCONS_00035772|Name=TCONS_00035772|organism=Clytia hemisphaerica|type=transcript|length=1064bp
TTTTCGTACGCAAAATGGTAGCTAATGctgtgaataattttttttgtaaa
caaaataaacaaaatacgTAAAGAATGTTCTAGTTGAGTACTACAGAATG
ATGTTTTATCACAATGTAATACACACAAGAGGGGACCGAGTGCAGAGATT
GTGAGAAGCCAGCAAGAGATAGCAGGAGAAACATGGACAAGTGAAACCAA
GAGGATAGGAAGGAAATAAGGAATCAACATAAGGAAATTATTAGGAGAGT
GGGGAGGAGACAAAGAAAAGCAAATGGAAAAGGGAAGTCAAAGGATAAAT
CAAGCTATATGTAGTGATTGGAaagaaaaatgtcaaacaaTGAAGAAAAT
GAGACATGTAAAGGACGACCTATATTATGGACAAAAAGAATATCTCAAAA
CATCGAGTAACATCGACAGCAGAAGAGAGGCGGCGGACTACCTGTGGATG
AGATTAGAAATGTTTGACATAGGAAACAACCACGGCAAGAACAGAAAGTG
TGTATGTGGAGAACCTGAGGAGCTAGAACATATAGTGGAATGCGAAAGAG
TAAGAGAAAGAATTCAATGGGAAGAAAAGATTAACAAAGATTAACAAAAC
AAACCGTGCCAAATGAGAATGGTTGCAAacgcaattttttgaaaattaca
tagATCCTCCTAAGGATTTACACCTGACAAATTGTTTCAGAAATATACAA
AAGCTGTGAATTTTCACAGACAGTGAAaacacatcctggcaaatgaacgg
ggtgagcatttgcatggggtattcgtcacccagtgtaaatgagataggac
gtctcaggctaaaagcgtgNACACATTCACTTACAGACTGGTTAGAATTG
CTCCAATAGTTCAAAACAGAGTCATATTCTGTAGCAAAttgtatgttgcg
gacataactaactatttaaagtattttatcagatttttggggagcagtta
tgctaacactttgacaatacaaaagagttacatttgtaaaaaccatgcat
ttccttgttttttttaattttttgtgtcctctaGAGGGTCGTTCTTCTAT
TAGAAATATGAGAA Run BLAST on NCBI protein sequence of TCONS_00035772-protein >TCONS_00035772-protein ID=TCONS_00035772-protein|Name=TCONS_00035772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MEKGSQRINQAICSDWKEKCQTMKKMRHVKDDLYYGQKEYLKTSSNIDSR
REAADYLWMRLEMFDIGNNHGKNRKCVCGEPEELEHIVECERVRERIQWE
EKINKD Run BLAST on NCBI transcript from alignment at sc0001362:114..1253+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035772 ID=TCONS_00035772|Name=TCONS_00035772|organism=Clytia hemisphaerica|type=transcript|length=1140bp|location=Sequence derived from alignment at sc0001362:114..1253+ (Clytia hemisphaerica)
TTTTCGTACGCAAAATGGTAGCTAATGctgtgaataattttttttgtaaa
caaaataaacaaaatacgTAAAGAATGTTCTAGTTGAGTACTACAGAATG
ATGTTTTATCACAATGTAATACACACAAGAGGGGACCGAGTGCAGAGATT
GTGAGAAGCCAGCAAGAGATAGCAGGAGAAACATGGACAAGTGAAACCAA
GAGGATAGGAAGGAAATAAGGAATCAACATAAGGAAATTATTAGGAGAGT
GGGGAGGAGACAAAGAAAAGCAAATGGAAAAGGGAAGTCAAAGGATAAAT
CAAGCTATATGTAGTGATTGGAaagaaaaatgtcaaacaaTGAAGAAAAT
GAGACATGTAAAGGACGACCTATATTATGGACAAAAAGAATATCTCAAAA
CATCGAGTAACATCGACAGCAGAAGAGAGGCGGCGGACTACCTGTGGATG
AGATTAGAAATGTTTGACATAGGAAACAACCACGGNCATCGACAGCAGAA
GAGAGGCGGCGGACTACCTGTGGATGAGATTAGAAATGTTTGACATAGGA
AACAACCACGGCAAGAACAGAAAGTGTGTATGTGGAGAACCTGAGGAGCT
AGAACATATAGTGGAATGCGAAAGAGTAAGAGAAAGAATTCAATGGGAAG
AAAAGATTAACAAAGATTAACAAAACAAACCGTGCCAAATGAGAATGGTT
GCAAacgcaattttttgaaaattacatagATCCTCCTAAGGATTTACACC
TGACAAATTGTTTCAGAAATATACAAAAGCTGTGAATTTTCACAGACAGT
GAAaacacatcctggcaaatgaacggggtgagcatttgcatggggtattc
gtcacccagtgtaaatgagataggacgtctcaggctaaaagcgtgNACAC
ATTCACTTACAGACTGGTTAGAATTGCTCCAATAGTTCAAAACAGAGTCA
TATTCTGTAGCAAAttgtatgttgcggacataactaactatttaaagtat
tttatcagatttttggggagcagttatgctaacactttgacaatacaaaa
gagttacatttgtaaaaaccatgcatttccttgttttttttaattttttg
tgtcctctaGAGGGTCGTTCTTCTATTAGAAATATGAGAA Coding sequence (CDS) from alignment at sc0001362:114..1253+ >TCONS_00035772 ID=TCONS_00035772|Name=TCONS_00035772|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0001362:114..1253+ (Clytia hemisphaerica)
ATGGAAAAGGGAAGTCAAAGGATAAATCAAGCTATATGTAGTGATTGGAa
agaaaaatgtcaaacaaTGAAGAAAATGAGACATGTAAAGGACGACCTAT
ATTATGGACAAAAAGAATATCTCAAAACATCGAGTAACATCGACAGCAGA
AGAGAGGCGGCGGACTACCTGTGGATGAGATTAGAAATGTTTGACATAGG
AAACAACCACGGCAAGAACAGAAAGTGTGTATGTGGAGAACCTGAGGAGC
TAGAACATATAGTGGAATGCGAAAGAGTAAGAGAAAGAATTCAATGGGAA
GAAAAGATTAACAAAGATTAAATGGAAAAGGGAAGTCAAAGGATAAATCA
AGCTATATGTAGTGATTGGAaagaaaaatgtcaaacaaTGAAGAAAATGA
GACATGTAAAGGACGACCTATATTATGGACAAAAAGAATATCTCAAAACA
TCGAGTAACATCGACAGCAGAAGAGAGGCGGCGGACTACCTGTGGATGAG
ATTAGAAATGTTTGACATAGGAAACAACCACGGCAAGAACAGAAAGTGTG
TATGTGGAGAACCTGAGGAGCTAGAACATATAGTGGAATGCGAAAGAGTA
AGAGAAAGAATTCAATGGGAAGAAAAGATTAACAAAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035772-exon-sc0001362-1491911889:114..524 | TCONS_00035772-exon-sc0001362-1491911889:114..524 | Clytia hemisphaerica | exon |
| TCONS_00035772-exon-sc0001362-1510915933:114..524 | TCONS_00035772-exon-sc0001362-1510915933:114..524 | Clytia hemisphaerica | exon |
| TCONS_00035772-exon-sc0001362-1575043694:114..524 | TCONS_00035772-exon-sc0001362-1575043694:114..524 | Clytia hemisphaerica | exon |
| TCONS_00035772-exon-sc0001362-1491911889:601..1253 | TCONS_00035772-exon-sc0001362-1491911889:601..1253 | Clytia hemisphaerica | exon |
| TCONS_00035772-exon-sc0001362-1510915933:601..1253 | TCONS_00035772-exon-sc0001362-1510915933:601..1253 | Clytia hemisphaerica | exon |
| TCONS_00035772-exon-sc0001362-1575043694:601..1253 | TCONS_00035772-exon-sc0001362-1575043694:601..1253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001362 | supercontig | sc0001362:114..1253 + |
Blast
The following BLAST results are available for this feature:
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