|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035771 ID=TCONS_00035771|Name=TCONS_00035771|organism=Clytia hemisphaerica|type=transcript|length=2801bp
GAGAAACACCCTCATGGACAAAGCTGATATGGTCATACAAAAGTTGAATA
AGCTTGAGAATGTCACAACACTTTCTCCATCAgaaaaagttctttttcaa
agtgACAATCCAAGTGATACTACAGATGTAGATGTGGAATCAGAGGCCGA
AAAGTTTGGAGATTTGCTTTTAACATCTTATTCAAAGGGCAATGAAATGA
AAACCTCAAAGACTGGATCGAATAATGATGAACCTGAGCTTTCAAAACCA
GAAAATTCAAACTCGACCAAAAACATATTAAAACCTTCATCTAGAACAGA
AGATTTGTTGCAATTTAACCCAAGAACGAATGCACAAAACGTACCAAAGT
CAGGAGAATCACTTCTTGATTCAGATGAATCAAAGGACGTGGAATCTAAG
CTTTCCAAATCTGAGAAATCCCTCTTAACATCTCATCCAACCAATAATGA
GAAGCCGTCCAATATATCAAACTTACAACGTACTAACTCAACAATTGATA
AATCTAGCTCTTACAATACAGGAACCGCCATTTTGTCACCTCTACCCAAT
GATAAACAATCTCATGTAATCAATATTTCCAAAACAGAAGAACATAACCA
CACGCTTGACAAAGATTTAATGAAATTCGAAAATTCTACTAAATCAACAA
GAACTGAATTGAAAGAAAGTCCGGACAATACAACATCACCTACCAAGCCC
TTTATTGACAATCGAAAACCACCAATGGATTCAACAGCAGCTAAACACCA
TATCAAAATCAACGTCAATCTAAACCAACCTACACAAGAAGATGACGAAA
TAGCTCTTGAGCAAGAAGTGGCCAAACAGTTATATAAAGATTCAATGAAA
CTCTACCATCCATCTAAAAAATCATACACAACCGAATCAAAAGTCGTTAA
CCGGGAGATTAGGTTAGATAATTTGGAATCAACAAACTCACCAGCAAACA
CCAGACAAGTGGATAACTTAGTGACCGAAGCTACCAAGAATATTCTAAAG
AAACTTTCAGGAGATAGCTCACAAAAAATAGAAGTTGAGAAAATCTTAAC
CGAATTTGCAAAAGAGCTGAAACCTGGTGATAAAAATGACCTACACCTTA
GAAATACAGCAAACCATGAAGAACCTCAAAGCACCAGAAATAAATCCTTC
AATAACAAAGTCCcattgatatcaatttcaatgCTTAAAAAGCCACAGCC
ATTAAATGAGACTACAAAAGCTGAACGCAAAGATACTCTTTTCAATCCCC
AACCAAGTACATATTTCTTCAAACCAAAACTCTACGAATCTATGACTGGC
ACTCAAAGATGTGGTTCATGCAGTGATTGTCCTCCATGCGATGGCTCCAA
AGACAGGATGGCTGAAGACTTAGCAGATTTGGCAAAAATGCAGCTTAAAC
AACAACAAGAAGGACAACAAGAGATGGCTTTACAGCAACAAATTCAACAG
CAAATGCAGCTTCAAGcacaacaacagcaacagcaACAGCAACAAGCAGC
ATATCAGCAACAACCAAGCTACGACCCATACCAGGCTGCAGCAGGGATGG
TTCCACCTCTGATGCCTGCCCAAATTCAAGGAGCTGCAGCAGGAATGGCT
CCACCTCCGATGCCTACCCAAAGTCAAGGATGGCAGCAGCCTCCCCCATC
TTCACCTGTTTCCCCTGGTATGCAGCCTCCCCCTGGCCCACCACCACCGC
CGCCGGCTCAACTTCCAGGTATTCAGGCATCCCCAACCCAGCCTGACTAC
TCATCTTTACTCACCCAACTGAAATCAATGTTCCGAAAACGTAAAAGACG
AAAACAAACATGCTCTCCGACACCTCCCTCATGTAAGTGTGACCAGTACC
CTTGTTCTTGTAACCAACCTATGTGTCAATGTGGAGAACAATGTAATTGC
CAGCAACAACCATGCTACTGCAACTGTAACGATCCGAATGCCAACATACA
AATGGGTATGGAAATGTTTCCAGTCGCAAGTTACAGTCCTGATCAGTCAT
GTATGTGCCCTAACAATCAACCCTGTATGTGTAGCTCTTATGGCAGTGCT
CTGACCCCATTCGGAGGTGGTATGCCTACCACCAACCGGATGAGTGGAGT
ATCGATGAACCCTATGGCTGGGATGGTTCCCACTACAGGTAACATAGGCT
GTGTCCCCCCTTTCTGTAATAATATAAATGGGAACCAAAATCCTTTACAA
TGTAACTGCAATGAAGCTTGTCAAGATAAAAATCCTGCAGACCCATGCTT
GCATCCTTGTAAATGTAGGAAACGTCCACCAGGTTATCCATTAGTTCCTC
CTCAAGCTCCTCAAGTAATTCGAGTCCCACAACCCGTAATTATTAGAGAG
CAAGCTCAACCCTTACCACAAGTGCCCCAACCTCCCCCTCCACCACCACC
CCCAATAATCATACGGGAGCCAGCTCCTGCTCAAGCCCCTGCCACACCTC
CACAAGCCCCACCTATCATCATGCAATCGCCACCCGCTCTTGTCTCTCCC
ATTCTAAGAGACAACTCTCCCACTCCGATCCCACCGATCATCatcaagaa
gaagaagaagaaaaagcatAGAAAGAAAGCGGTGCGGATTGCTCAGCAAA
GTCCAACTGCTCCTCCTCCATCCTCTCCTATTATTCTAGCAGCACCACCA
CCCCAACCTCCGCCACCAcccccaccaccaccaccacagATCCAACCGAT
TATCATTCAGACACCACCGTCCCCACCTCCTCCTCCACCTCCACCTCCTC
CACCTCCACCGCCACCTATAATTCTTCAGGCTCCTCCACCTCCACCTCCA
C Run BLAST on NCBI protein sequence of TCONS_00035771-protein >TCONS_00035771-protein ID=TCONS_00035771-protein|Name=TCONS_00035771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=933bp
RNTLMDKADMVIQKLNKLENVTTLSPSEKVLFQSDNPSDTTDVDVESEAE
KFGDLLLTSYSKGNEMKTSKTGSNNDEPELSKPENSNSTKNILKPSSRTE
DLLQFNPRTNAQNVPKSGESLLDSDESKDVESKLSKSEKSLLTSHPTNNE
KPSNISNLQRTNSTIDKSSSYNTGTAILSPLPNDKQSHVINISKTEEHNH
TLDKDLMKFENSTKSTRTELKESPDNTTSPTKPFIDNRKPPMDSTAAKHH
IKINVNLNQPTQEDDEIALEQEVAKQLYKDSMKLYHPSKKSYTTESKVVN
REIRLDNLESTNSPANTRQVDNLVTEATKNILKKLSGDSSQKIEVEKILT
EFAKELKPGDKNDLHLRNTANHEEPQSTRNKSFNNKVPLISISMLKKPQP
LNETTKAERKDTLFNPQPSTYFFKPKLYESMTGTQRCGSCSDCPPCDGSK
DRMAEDLADLAKMQLKQQQEGQQEMALQQQIQQQMQLQAQQQQQQQQQAA
YQQQPSYDPYQAAAGMVPPLMPAQIQGAAAGMAPPPMPTQSQGWQQPPPS
SPVSPGMQPPPGPPPPPPAQLPGIQASPTQPDYSSLLTQLKSMFRKRKRR
KQTCSPTPPSCKCDQYPCSCNQPMCQCGEQCNCQQQPCYCNCNDPNANIQ
MGMEMFPVASYSPDQSCMCPNNQPCMCSSYGSALTPFGGGMPTTNRMSGV
SMNPMAGMVPTTGNIGCVPPFCNNINGNQNPLQCNCNEACQDKNPADPCL
HPCKCRKRPPGYPLVPPQAPQVIRVPQPVIIREQAQPLPQVPQPPPPPPP
PIIIREPAPAQAPATPPQAPPIIMQSPPALVSPILRDNSPTPIPPIIIKK
KKKKKHRKKAVRIAQQSPTAPPPSSPIILAAPPPQPPPPPPPPPPQIQPI
IIQTPPSPPPPPPPPPPPPPPPIILQAPPPPPP Run BLAST on NCBI transcript from alignment at sc0001360:31453..34253 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035771 ID=TCONS_00035771|Name=TCONS_00035771|organism=Clytia hemisphaerica|type=transcript|length=2801bp|location=Sequence derived from alignment at sc0001360:31453..34253 (Clytia hemisphaerica)
GTGGAGGTGGAGGTGGAGGAGCCTGAAGAATTATAGGTGGCGGTGGAGGT
GGAGGAGGTGGAGGTGGAGGAGGAGGTGGGGACGGTGGTGTCTGAATGAT
AATCGGTTGGATctgtggtggtggtggtgggggTGGTGGCGGAGGTTGGG
GTGGTGGTGCTGCTAGAATAATAGGAGAGGATGGAGGAGGAGCAGTTGGA
CTTTGCTGAGCAATCCGCACCGCTTTCTTTCTatgctttttcttcttctt
cttcttgatGATGATCGGTGGGATCGGAGTGGGAGAGTTGTCTCTTAGAA
TGGGAGAGACAAGAGCGGGTGGCGATTGCATGATGATAGGTGGGGCTTGT
GGAGGTGTGGCAGGGGCTTGAGCAGGAGCTGGCTCCCGTATGATTATTGG
GGGTGGTGGTGGAGGGGGAGGTTGGGGCACTTGTGGTAAGGGTTGAGCTT
GCTCTCTAATAATTACGGGTTGTGGGACTCGAATTACTTGAGGAGCTTGA
GGAGGAACTAATGGATAACCTGGTGGACGTTTCCTACATTTACAAGGATG
CAAGCATGGGTCTGCAGGATTTTTATCTTGACAAGCTTCATTGCAGTTAC
ATTGTAAAGGATTTTGGTTCCCATTTATATTATTACAGAAAGGGGGGACA
CAGCCTATGTTACCTGTAGTGGGAACCATCCCAGCCATAGGGTTCATCGA
TACTCCACTCATCCGGTTGGTGGTAGGCATACCACCTCCGAATGGGGTCA
GAGCACTGCCATAAGAGCTACACATACAGGGTTGATTGTTAGGGCACATA
CATGACTGATCAGGACTGTAACTTGCGACTGGAAACATTTCCATACCCAT
TTGTATGTTGGCATTCGGATCGTTACAGTTGCAGTAGCATGGTTGTTGCT
GGCAATTACATTGTTCTCCACATTGACACATAGGTTGGTTACAAGAACAA
GGGTACTGGTCACACTTACATGAGGGAGGTGTCGGAGAGCATGTTTGTTT
TCGTCTTTTACGTTTTCGGAACATTGATTTCAGTTGGGTGAGTAAAGATG
AGTAGTCAGGCTGGGTTGGGGATGCCTGAATACCTGGAAGTTGAGCCGGC
GGCGGTGGTGGTGGGCCAGGGGGAGGCTGCATACCAGGGGAAACAGGTGA
AGATGGGGGAGGCTGCTGCCATCCTTGACTTTGGGTAGGCATCGGAGGTG
GAGCCATTCCTGCTGCAGCTCCTTGAATTTGGGCAGGCATCAGAGGTGGA
ACCATCCCTGCTGCAGCCTGGTATGGGTCGTAGCTTGGTTGTTGCTGATA
TGCTGCTTGTTGCTGTtgctgttgctgttgttgtgCTTGAAGCTGCATTT
GCTGTTGAATTTGTTGCTGTAAAGCCATCTCTTGTTGTCCTTCTTGTTGT
TGTTTAAGCTGCATTTTTGCCAAATCTGCTAAGTCTTCAGCCATCCTGTC
TTTGGAGCCATCGCATGGAGGACAATCACTGCATGAACCACATCTTTGAG
TGCCAGTCATAGATTCGTAGAGTTTTGGTTTGAAGAAATATGTACTTGGT
TGGGGATTGAAAAGAGTATCTTTGCGTTCAGCTTTTGTAGTCTCATTTAA
TGGCTGTGGCTTTTTAAGcattgaaattgatatcaatgGGACTTTGTTAT
TGAAGGATTTATTTCTGGTGCTTTGAGGTTCTTCATGGTTTGCTGTATTT
CTAAGGTGTAGGTCATTTTTATCACCAGGTTTCAGCTCTTTTGCAAATTC
GGTTAAGATTTTCTCAACTTCTATTTTTTGTGAGCTATCTCCTGAAAGTT
TCTTTAGAATATTCTTGGTAGCTTCGGTCACTAAGTTATCCACTTGTCTG
GTGTTTGCTGGTGAGTTTGTTGATTCCAAATTATCTAACCTAATCTCCCG
GTTAACGACTTTTGATTCGGTTGTGTATGATTTTTTAGATGGATGGTAGA
GTTTCATTGAATCTTTATATAACTGTTTGGCCACTTCTTGCTCAAGAGCT
ATTTCGTCATCTTCTTGTGTAGGTTGGTTTAGATTGACGTTGATTTTGAT
ATGGTGTTTAGCTGCTGTTGAATCCATTGGTGGTTTTCGATTGTCAATAA
AGGGCTTGGTAGGTGATGTTGTATTGTCCGGACTTTCTTTCAATTCAGTT
CTTGTTGATTTAGTAGAATTTTCGAATTTCATTAAATCTTTGTCAAGCGT
GTGGTTATGTTCTTCTGTTTTGGAAATATTGATTACATGAGATTGTTTAT
CATTGGGTAGAGGTGACAAAATGGCGGTTCCTGTATTGTAAGAGCTAGAT
TTATCAATTGTTGAGTTAGTACGTTGTAAGTTTGATATATTGGACGGCTT
CTCATTATTGGTTGGATGAGATGTTAAGAGGGATTTCTCAGATTTGGAAA
GCTTAGATTCCACGTCCTTTGATTCATCTGAATCAAGAAGTGATTCTCCT
GACTTTGGTACGTTTTGTGCATTCGTTCTTGGGTTAAATTGCAACAAATC
TTCTGTTCTAGATGAAGGTTTTAATATGTTTTTGGTCGAGTTTGAATTTT
CTGGTTTTGAAAGCTCAGGTTCATCATTATTCGATCCAGTCTTTGAGGTT
TTCATTTCATTGCCCTTTGAATAAGATGTTAAAAGCAAATCTCCAAACTT
TTCGGCCTCTGATTCCACATCTACATCTGTAGTATCACTTGGATTGTcac
tttgaaaaagaactttttcTGATGGAGAAAGTGTTGTGACATTCTCAAGC
TTATTCAACTTTTGTATGACCATATCAGCTTTGTCCATGAGGGTGTTTCT
C Coding sequence (CDS) from alignment at sc0001360:31453..34253 >TCONS_00035771 ID=TCONS_00035771|Name=TCONS_00035771|organism=Clytia hemisphaerica|type=CDS|length=2799bp|location=Sequence derived from alignment at sc0001360:31453..34253 (Clytia hemisphaerica)
TGGAGGTGGAGGTGGAGGAGCCTGAAGAATTATAGGTGGCGGTGGAGGTG
GAGGAGGTGGAGGTGGAGGAGGAGGTGGGGACGGTGGTGTCTGAATGATA
ATCGGTTGGATctgtggtggtggtggtgggggTGGTGGCGGAGGTTGGGG
TGGTGGTGCTGCTAGAATAATAGGAGAGGATGGAGGAGGAGCAGTTGGAC
TTTGCTGAGCAATCCGCACCGCTTTCTTTCTatgctttttcttcttcttc
ttcttgatGATGATCGGTGGGATCGGAGTGGGAGAGTTGTCTCTTAGAAT
GGGAGAGACAAGAGCGGGTGGCGATTGCATGATGATAGGTGGGGCTTGTG
GAGGTGTGGCAGGGGCTTGAGCAGGAGCTGGCTCCCGTATGATTATTGGG
GGTGGTGGTGGAGGGGGAGGTTGGGGCACTTGTGGTAAGGGTTGAGCTTG
CTCTCTAATAATTACGGGTTGTGGGACTCGAATTACTTGAGGAGCTTGAG
GAGGAACTAATGGATAACCTGGTGGACGTTTCCTACATTTACAAGGATGC
AAGCATGGGTCTGCAGGATTTTTATCTTGACAAGCTTCATTGCAGTTACA
TTGTAAAGGATTTTGGTTCCCATTTATATTATTACAGAAAGGGGGGACAC
AGCCTATGTTACCTGTAGTGGGAACCATCCCAGCCATAGGGTTCATCGAT
ACTCCACTCATCCGGTTGGTGGTAGGCATACCACCTCCGAATGGGGTCAG
AGCACTGCCATAAGAGCTACACATACAGGGTTGATTGTTAGGGCACATAC
ATGACTGATCAGGACTGTAACTTGCGACTGGAAACATTTCCATACCCATT
TGTATGTTGGCATTCGGATCGTTACAGTTGCAGTAGCATGGTTGTTGCTG
GCAATTACATTGTTCTCCACATTGACACATAGGTTGGTTACAAGAACAAG
GGTACTGGTCACACTTACATGAGGGAGGTGTCGGAGAGCATGTTTGTTTT
CGTCTTTTACGTTTTCGGAACATTGATTTCAGTTGGGTGAGTAAAGATGA
GTAGTCAGGCTGGGTTGGGGATGCCTGAATACCTGGAAGTTGAGCCGGCG
GCGGTGGTGGTGGGCCAGGGGGAGGCTGCATACCAGGGGAAACAGGTGAA
GATGGGGGAGGCTGCTGCCATCCTTGACTTTGGGTAGGCATCGGAGGTGG
AGCCATTCCTGCTGCAGCTCCTTGAATTTGGGCAGGCATCAGAGGTGGAA
CCATCCCTGCTGCAGCCTGGTATGGGTCGTAGCTTGGTTGTTGCTGATAT
GCTGCTTGTTGCTGTtgctgttgctgttgttgtgCTTGAAGCTGCATTTG
CTGTTGAATTTGTTGCTGTAAAGCCATCTCTTGTTGTCCTTCTTGTTGTT
GTTTAAGCTGCATTTTTGCCAAATCTGCTAAGTCTTCAGCCATCCTGTCT
TTGGAGCCATCGCATGGAGGACAATCACTGCATGAACCACATCTTTGAGT
GCCAGTCATAGATTCGTAGAGTTTTGGTTTGAAGAAATATGTACTTGGTT
GGGGATTGAAAAGAGTATCTTTGCGTTCAGCTTTTGTAGTCTCATTTAAT
GGCTGTGGCTTTTTAAGcattgaaattgatatcaatgGGACTTTGTTATT
GAAGGATTTATTTCTGGTGCTTTGAGGTTCTTCATGGTTTGCTGTATTTC
TAAGGTGTAGGTCATTTTTATCACCAGGTTTCAGCTCTTTTGCAAATTCG
GTTAAGATTTTCTCAACTTCTATTTTTTGTGAGCTATCTCCTGAAAGTTT
CTTTAGAATATTCTTGGTAGCTTCGGTCACTAAGTTATCCACTTGTCTGG
TGTTTGCTGGTGAGTTTGTTGATTCCAAATTATCTAACCTAATCTCCCGG
TTAACGACTTTTGATTCGGTTGTGTATGATTTTTTAGATGGATGGTAGAG
TTTCATTGAATCTTTATATAACTGTTTGGCCACTTCTTGCTCAAGAGCTA
TTTCGTCATCTTCTTGTGTAGGTTGGTTTAGATTGACGTTGATTTTGATA
TGGTGTTTAGCTGCTGTTGAATCCATTGGTGGTTTTCGATTGTCAATAAA
GGGCTTGGTAGGTGATGTTGTATTGTCCGGACTTTCTTTCAATTCAGTTC
TTGTTGATTTAGTAGAATTTTCGAATTTCATTAAATCTTTGTCAAGCGTG
TGGTTATGTTCTTCTGTTTTGGAAATATTGATTACATGAGATTGTTTATC
ATTGGGTAGAGGTGACAAAATGGCGGTTCCTGTATTGTAAGAGCTAGATT
TATCAATTGTTGAGTTAGTACGTTGTAAGTTTGATATATTGGACGGCTTC
TCATTATTGGTTGGATGAGATGTTAAGAGGGATTTCTCAGATTTGGAAAG
CTTAGATTCCACGTCCTTTGATTCATCTGAATCAAGAAGTGATTCTCCTG
ACTTTGGTACGTTTTGTGCATTCGTTCTTGGGTTAAATTGCAACAAATCT
TCTGTTCTAGATGAAGGTTTTAATATGTTTTTGGTCGAGTTTGAATTTTC
TGGTTTTGAAAGCTCAGGTTCATCATTATTCGATCCAGTCTTTGAGGTTT
TCATTTCATTGCCCTTTGAATAAGATGTTAAAAGCAAATCTCCAAACTTT
TCGGCCTCTGATTCCACATCTACATCTGTAGTATCACTTGGATTGTcact
ttgaaaaagaactttttcTGATGGAGAAAGTGTTGTGACATTCTCAAGCT
TATTCAACTTTTGTATGACCATATCAGCTTTGTCCATGAGGGTGTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035771-exon-sc0001360-1491911889:31453..34253 | TCONS_00035771-exon-sc0001360-1491911889:31453..34253 | Clytia hemisphaerica | exon |
| TCONS_00035771-exon-sc0001360-1510915933:31453..34253 | TCONS_00035771-exon-sc0001360-1510915933:31453..34253 | Clytia hemisphaerica | exon |
| TCONS_00035771-exon-sc0001360-1575043694:31453..34253 | TCONS_00035771-exon-sc0001360-1575043694:31453..34253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001360 | supercontig | sc0001360:31453..34253 . |
Blast
The following BLAST results are available for this feature:
|
