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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035770 ID=TCONS_00035770|Name=TCONS_00035770|organism=Clytia hemisphaerica|type=transcript|length=1438bp
CCAATCTCAGCTGTCCAGCCTCTCCCAACTGAAGCACCAGTCATAAACAC
AACAAGCACAACAATTCCACCACCTGTCATTGCTGCTACCTTACCCCCTC
CTCCACCAGCACCACTCCCTCCGATACTTCCACCTCAGTCACCGCAAGCC
CCTCCAGCAGCACCTCCTCCCGGATTTCAACCTCCACCTTTACCTCCTCT
TCCTCTACCTCAGTCACCTCAACTTCCTCCACCTCTTCCCCCAGCCCTTC
CTCCACCTCTTCCCCTACCTCAATCTCCCTCTCTACTGGCATCAGCAGCT
GCTGCTCAACTCATGAAAATGAAACGCAAGCGGAAGAGACATAGAAGGAA
GCGTAAACCCCGCATAAGAGTCCTTCAGCCTTTTGCTAGAGCTGACCCAA
ACGACGACGCGTCAAATAATGATTTACCTCAAGATATACAGTTACCACAA
ACACAACGGGACCAAGTGTCCTCAGACGAAGACACCAACTCCGTGGAAGG
AGTCAAAGGGATTATTCAGAAAATCACACACAAAGCTCTAGTAGTAGGTG
CTAACCTAACAGATGGTTTGGAGGAAAAATTAACTAATGTTCTAGCTGAA
GCTATTGCTAAGGGCCATGAAAAGCATTTAAACGCTAATAATAACACGAG
AAAATATAATATTGTGCATCCAGCTGAAAAATTACACCAGATACATTTGG
ATCCAACAATTCACGGTTTTGTTAAAGCTTATTCGGTTCGTAGATCAAAA
GACAATACCATTGGAAACACCGCTAAAGTTCAGATTTTTGTAGATAGAGG
TTTTATgcaagaaaaactgaaaactacgAATAATATTTCTAATGCTAAAA
GAGATCTTGTAAGTGTGGCTGCGAAGAAACTGGCGACATCTAAAAAAGCT
TCTTTGAGAAAACggctgaaattccagagaaTGAAAAGCTCACATAAGCA
TCATCCTACAAAATCTATAAAAGTGCATCGTAGGATATCTACCCATGATA
GGTCAAAGATTTCTAATCCAGATTTATACAGAAAGAAATCTAAGAAGCAT
CAGGTTAGAAATGAAGGCAAAAAACAGAAACTcaaaagacattcaatttt
aaaacaaagaCATTCTACGATGCCGAGTCTATCGGCAGGCACACGTGTTA
CAATTAATGATCGGAGTATTCCTACTCTAGGTTACAGTTCTAAACGGGAC
AAACAGATTGAAAGACTGTTCGCTAAAGATCTTGACAAGTGGTATGTAGA
AAAGCGGAGGAGGCAGATATGGTCCAGGAAAGAATAGATAAATTTTACAA
ACGTGGCTGAAAAGGGTCCATTTATCCGACGATAGACTTTTTTAttaatc
attttcagaaaaaggacTGCCTCGTTTCCAAACCATTACCGAGGTGATTA
AATCCATTGAGTCTTCAActgttttttatagaaattac Run BLAST on NCBI protein sequence of TCONS_00035770-protein >TCONS_00035770-protein ID=TCONS_00035770-protein|Name=TCONS_00035770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
PISAVQPLPTEAPVINTTSTTIPPPVIAATLPPPPPAPLPPILPPQSPQA
PPAAPPPGFQPPPLPPLPLPQSPQLPPPLPPALPPPLPLPQSPSLLASAA
AAQLMKMKRKRKRHRRKRKPRIRVLQPFARADPNDDASNNDLPQDIQLPQ
TQRDQVSSDEDTNSVEGVKGIIQKITHKALVVGANLTDGLEEKLTNVLAE
AIAKGHEKHLNANNNTRKYNIVHPAEKLHQIHLDPTIHGFVKAYSVRRSK
DNTIGNTAKVQIFVDRGFMQEKLKTTNNISNAKRDLVSVAAKKLATSKKA
SLRKRLKFQRMKSSHKHHPTKSIKVHRRISTHDRSKISNPDLYRKKSKKH
QVRNEGKKQKLKRHSILKQRHSTMPSLSAGTRVTINDRSIPTLGYSSKRD
KQIERLFAKDLDKWYVEKRRRQIWSRKE Run BLAST on NCBI transcript from alignment at sc0001360:29869..31306 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035770 ID=TCONS_00035770|Name=TCONS_00035770|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at sc0001360:29869..31306 (Clytia hemisphaerica)
gtaatttctataaaaaacagTTGAAGACTCAATGGATTTAATCACCTCGG
TAATGGTTTGGAAACGAGGCAgtcctttttctgaaaatgattaaTAAAAA
AGTCTATCGTCGGATAAATGGACCCTTTTCAGCCACGTTTGTAAAATTTA
TCTATTCTTTCCTGGACCATATCTGCCTCCTCCGCTTTTCTACATACCAC
TTGTCAAGATCTTTAGCGAACAGTCTTTCAATCTGTTTGTCCCGTTTAGA
ACTGTAACCTAGAGTAGGAATACTCCGATCATTAATTGTAACACGTGTGC
CTGCCGATAGACTCGGCATCGTAGAATGtctttgttttaaaattgaatgt
cttttgAGTTTCTGTTTTTTGCCTTCATTTCTAACCTGATGCTTCTTAGA
TTTCTTTCTGTATAAATCTGGATTAGAAATCTTTGACCTATCATGGGTAG
ATATCCTACGATGCACTTTTATAGATTTTGTAGGATGATGCTTATGTGAG
CTTTTCAttctctggaatttcagccGTTTTCTCAAAGAAGCTTTTTTAGA
TGTCGCCAGTTTCTTCGCAGCCACACTTACAAGATCTCTTTTAGCATTAG
AAATATTATTcgtagttttcagtttttcttgcATAAAACCTCTATCTACA
AAAATCTGAACTTTAGCGGTGTTTCCAATGGTATTGTCTTTTGATCTACG
AACCGAATAAGCTTTAACAAAACCGTGAATTGTTGGATCCAAATGTATCT
GGTGTAATTTTTCAGCTGGATGCACAATATTATATTTTCTCGTGTTATTA
TTAGCGTTTAAATGCTTTTCATGGCCCTTAGCAATAGCTTCAGCTAGAAC
ATTAGTTAATTTTTCCTCCAAACCATCTGTTAGGTTAGCACCTACTACTA
GAGCTTTGTGTGTGATTTTCTGAATAATCCCTTTGACTCCTTCCACGGAG
TTGGTGTCTTCGTCTGAGGACACTTGGTCCCGTTGTGTTTGTGGTAACTG
TATATCTTGAGGTAAATCATTATTTGACGCGTCGTCGTTTGGGTCAGCTC
TAGCAAAAGGCTGAAGGACTCTTATGCGGGGTTTACGCTTCCTTCTATGT
CTCTTCCGCTTGCGTTTCATTTTCATGAGTTGAGCAGCAGCTGCTGATGC
CAGTAGAGAGGGAGATTGAGGTAGGGGAAGAGGTGGAGGAAGGGCTGGGG
GAAGAGGTGGAGGAAGTTGAGGTGACTGAGGTAGAGGAAGAGGAGGTAAA
GGTGGAGGTTGAAATCCGGGAGGAGGTGCTGCTGGAGGGGCTTGCGGTGA
CTGAGGTGGAAGTATCGGAGGGAGTGGTGCTGGTGGAGGAGGGGGTAAGG
TAGCAGCAATGACAGGTGGTGGAATTGTTGTGCTTGTTGTGTTTATGACT
GGTGCTTCAGTTGGGAGAGGCTGGACAGCTGAGATTGG Coding sequence (CDS) from alignment at sc0001360:29869..31306 >TCONS_00035770 ID=TCONS_00035770|Name=TCONS_00035770|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at sc0001360:29869..31306 (Clytia hemisphaerica)
CTATTCTTTCCTGGACCATATCTGCCTCCTCCGCTTTTCTACATACCACT
TGTCAAGATCTTTAGCGAACAGTCTTTCAATCTGTTTGTCCCGTTTAGAA
CTGTAACCTAGAGTAGGAATACTCCGATCATTAATTGTAACACGTGTGCC
TGCCGATAGACTCGGCATCGTAGAATGtctttgttttaaaattgaatgtc
ttttgAGTTTCTGTTTTTTGCCTTCATTTCTAACCTGATGCTTCTTAGAT
TTCTTTCTGTATAAATCTGGATTAGAAATCTTTGACCTATCATGGGTAGA
TATCCTACGATGCACTTTTATAGATTTTGTAGGATGATGCTTATGTGAGC
TTTTCAttctctggaatttcagccGTTTTCTCAAAGAAGCTTTTTTAGAT
GTCGCCAGTTTCTTCGCAGCCACACTTACAAGATCTCTTTTAGCATTAGA
AATATTATTcgtagttttcagtttttcttgcATAAAACCTCTATCTACAA
AAATCTGAACTTTAGCGGTGTTTCCAATGGTATTGTCTTTTGATCTACGA
ACCGAATAAGCTTTAACAAAACCGTGAATTGTTGGATCCAAATGTATCTG
GTGTAATTTTTCAGCTGGATGCACAATATTATATTTTCTCGTGTTATTAT
TAGCGTTTAAATGCTTTTCATGGCCCTTAGCAATAGCTTCAGCTAGAACA
TTAGTTAATTTTTCCTCCAAACCATCTGTTAGGTTAGCACCTACTACTAG
AGCTTTGTGTGTGATTTTCTGAATAATCCCTTTGACTCCTTCCACGGAGT
TGGTGTCTTCGTCTGAGGACACTTGGTCCCGTTGTGTTTGTGGTAACTGT
ATATCTTGAGGTAAATCATTATTTGACGCGTCGTCGTTTGGGTCAGCTCT
AGCAAAAGGCTGAAGGACTCTTATGCGGGGTTTACGCTTCCTTCTATGTC
TCTTCCGCTTGCGTTTCATTTTCATGAGTTGAGCAGCAGCTGCTGATGCC
AGTAGAGAGGGAGATTGAGGTAGGGGAAGAGGTGGAGGAAGGGCTGGGGG
AAGAGGTGGAGGAAGTTGAGGTGACTGAGGTAGAGGAAGAGGAGGTAAAG
GTGGAGGTTGAAATCCGGGAGGAGGTGCTGCTGGAGGGGCTTGCGGTGAC
TGAGGTGGAAGTATCGGAGGGAGTGGTGCTGGTGGAGGAGGGGGTAAGGT
AGCAGCAATGACAGGTGGTGGAATTGTTGTGCTTGTTGTGTTTATGACTG
GTGCTTCAGTTGGGAGAGGCTGGACAGCTGAGATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035770-exon-sc0001360-1491911889:29869..31306 | TCONS_00035770-exon-sc0001360-1491911889:29869..31306 | Clytia hemisphaerica | exon |
| TCONS_00035770-exon-sc0001360-1510915933:29869..31306 | TCONS_00035770-exon-sc0001360-1510915933:29869..31306 | Clytia hemisphaerica | exon |
| TCONS_00035770-exon-sc0001360-1575043694:29869..31306 | TCONS_00035770-exon-sc0001360-1575043694:29869..31306 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001360 | supercontig | sc0001360:29869..31306 . |
Blast
The following BLAST results are available for this feature:
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