TCONS_00035765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035765
Unique NameTCONS_00035765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035765 ID=TCONS_00035765|Name=TCONS_00035765|organism=Clytia hemisphaerica|type=transcript|length=478bp
CTCAAGACAAAAGGAAGAATAACAAAGATACCAACACCACAAAAACAAGA
AAAATGAAGACAATCACTTTCGTTGCACTTCTGCCATTGTTGGCGAATGG
AGCTTTTGGGTTCCTGAAGAATGGTCCCTGGAACTGTCGTAATTTAGCCT
GCTTCTTGAAGGAAGGCCAGACAATTCACAGCAAAACTCTTAAACACTGG
GATGAAAAGACCTGTGGATCCTTCACTGGACTCTCATGTTCGGCCGCTAA
TGACCGTGTTGCAAGTAAGTGCCAATCGGATTTAAACAATGGTGATATCC
AACTCCACATTTGCAATCAAAAAGCAGCAAGCATCCCAACATATCCGTAC
AAGTTGACTGTTTGGGTTACCAAAATGGGGAAAGCTAATTGCATGTCAAA
TAATGCCAACAACTTTTGGATGGATAAGGATCATAACGGTGTTCCAAAAC
GACGCGCCATTTGCTGCACTAAATATTC
Run BLAST on NCBI

protein sequence of TCONS_00035765-protein

>TCONS_00035765-protein ID=TCONS_00035765-protein|Name=TCONS_00035765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
QDKRKNNKDTNTTKTRKMKTITFVALLPLLANGAFGFLKNGPWNCRNLAC
FLKEGQTIHSKTLKHWDEKTCGSFTGLSCSAANDRVASKCQSDLNNGDIQ
LHICNQKAASIPTYPYKLTVWVTKMGKANCMSNNANNFWMDKDHNGVPKR
RAICCTKY
Run BLAST on NCBI

transcript from alignment at sc0001360:58187..59058-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035765 ID=TCONS_00035765|Name=TCONS_00035765|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at sc0001360:58187..59058- (Clytia hemisphaerica)
CTCAAGACAAAAGGAAGAATAACAAAGATACCAACACCACAAAAACAAGG
TAACATATTATCTGACTTACTTTTCATCTATTAAGAAACAATCTAGAATC
AATAATCAATTCAATGTCAACTAATTGTCACGTAACCTTTGAAAACTTTG
TCTGTTTCTGATAGCTGTGGATTTATTACAAAGCTACCAAATATTCACCA
AAATAAAGAATCTTATGATAAAAAATATCATATCTACTTTCAGAAAAATG
AAGACAATCACTTTCGTTGCACTTCTGCCATTTNGAAACAATCTAGAATC
AATAATCAATTCAATGTCAACTAATTGTCATGTAACTTTTGAAAACTTTG
TCTGTTTCTGATAGCTGTGGATTTATTACAAAGCTACCAAATATTCACCA
AAATAAAGAATCTTATGATAAAAGATATCATATCTACTTTCAGAAAAATG
AAGACAATCACTTTCGTTGCACTTCTGCCATTGTTGGCGAATGGAGCTTT
TGGGTTCCTGAAGAATGGTCCCTGGAACTGTCGTAATTTAGCCTGCTTCT
TGAAGGAAGGCCAGACAATTCACAGCAAAACTCTTAAACACTGGGATGAA
AAGACCTGTGGATCCTTCACTGGACTCTCATGTTCGGCCGCTAATGACCG
TGTTGCAAGTAAGTGCCAATCGGATTTAAACAATGGTGATATCCAACTCC
ACATTTGCAATCAAAAAGCAGCAAGCATCCCAACATATCCGTACAAGTTG
ACTGTTTGGGTTACCAAAATGGGGAAAGCTAATTGCATGTCAAATAATGC
CAACAACTTTTGGATGGATAAGGATCATAACGGTGTTCCAAAACGACGCG
CCATTTGCTGCACTAAATATTC

Coding sequence (CDS) from alignment at sc0001360:58187..59058-

>TCONS_00035765 ID=TCONS_00035765|Name=TCONS_00035765|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at sc0001360:58187..59058- (Clytia hemisphaerica)
AAAAATGAAGACAATCACTTTCGTTGCACTTCTGCCATTGTTGGCGAATG
GAGCTTTTGGGTTCCTGAAGAATGGTCCCTGGAACTGTCGTAATTTAGCC
TGCTTCTTGAAGGAAGGCCAGACAATTCACAGCAAAACTCTTAAACACTG
GGATGAAAAGACCTGTGGATCCTTCACTGGACTCTCATGTTCGGCCGCTA
ATGACCGTGTTGCAAGTAAGTGCCAATCGGATTTAAACAATGGTGATATC
CAACTCCACATTTGCAATCAAAAAGCAGCAAGCATCCCAACATATCCGTA
CAAGTTGACTGTTTGGGTTACCAAAATGGGGAAAGCTAATTGCATGTCAA
ATAATGCCAACAACTTTTGGATGGATAAGGATCATAACGGTGTTCCAAAA
CGACGCGCCATTTGCTGCACTAAATATCAAGACAAAAGGAAGAATAACAA
AGATACCAACACCACAAAAACAAGAAAAATGAAGACAATCACTTTCGTTG
CACTTCTGCCATTGTTGGCGAATGGAGCTTTTGGGTTCCTGAAGAATGGT
CCCTGGAACTGTCGTAATTTAGCCTGCTTCTTGAAGGAAGGCCAGACAAT
TCACAGCAAAACTCTTAAACACTGGGATGAAAAGACCTGTGGATCCTTCA
CTGGACTCTCATGTTCGGCCGCTAATGACCGTGTTGCAAGTAAGTGCCAA
TCGGATTTAAACAATGGTGATATCCAACTCCACATTTGCAATCAAAAAGC
AGCAAGCATCCCAACATATCCGTACAAGTTGACTGTTTGGGTTACCAAAA
TGGGGAAAGCTAATTGCATGTCAAATAATGCCAACAACTTTTGGATGGAT
AAGGATCATAACGGTGTTCCAAAACGACGCGCCATTTGCTGCACTAAATA
TCAAGACAAAAGGAAGAATAACAAAGATACCAACACCACAAAAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020980XLOC_020980Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035765-proteinTCONS_00035765-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035765-exon-sc0001360-1575043694:59010..59058TCONS_00035765-exon-sc0001360-1575043694:59010..59058Clytia hemisphaericaexon
TCONS_00035765-exon-sc0001360-1575043694:58187..58615TCONS_00035765-exon-sc0001360-1575043694:58187..58615Clytia hemisphaericaexon
TCONS_00035765-exon-sc0001360-1510915933:59010..59058TCONS_00035765-exon-sc0001360-1510915933:59010..59058Clytia hemisphaericaexon
TCONS_00035765-exon-sc0001360-1510915933:58187..58615TCONS_00035765-exon-sc0001360-1510915933:58187..58615Clytia hemisphaericaexon
TCONS_00035765-exon-sc0001360-1491911889:59010..59058TCONS_00035765-exon-sc0001360-1491911889:59010..59058Clytia hemisphaericaexon
TCONS_00035765-exon-sc0001360-1491911889:58187..58615TCONS_00035765-exon-sc0001360-1491911889:58187..58615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001360supercontigsc0001360:58187..59058 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.128611	0	0	0.889288	0	1.01737	0.952453	0.333417	2.52703	0.13362	0.0878364	0.438571	0.455461	0.0748901	1.2859	0.297022	0.507397	0	0	0.255033	0.186594	0	0	0	0	0	0	0.146385	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top