TCONS_00035762 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035762
Unique NameTCONS_00035762
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035762 ID=TCONS_00035762|Name=TCONS_00035762|organism=Clytia hemisphaerica|type=transcript|length=714bp
GCCTGAAGAATCagccaaaaaaaagaaaaggtccTGGAAAGAACGAATGG
AAAGAATCGAAAAAGCATGGTCagaggaaaaagaaaacattttcagcTCA
TTAAGATTGAAATCAGCGTTTTTATCAAAAGAGAAATGTGCTTTGTGTTT
ATCTAAAACAGCTGCTGTGGATTGTCACGAGTGTCGTATTCACTTATGTG
AAATTTGTGATCGAGATATTCACAATAAAAACCCACTTCACAACCGCTTT
TCATTTGTAAACGACAAAACTCAAGCTTTGACACCAATGCAGGCCTTAAA
TGATAACCTAGAAATCTATACTGTTGATCGACTAGTTCCATTGAGACATG
CTGTGTGCATATGTGGGTCTaataattttgaagaaattgtcaAACAAGGA
AATGTTGTGGTTATAACAATGACAGGTAAATTTGACTTGGTTCCATTCGT
TCTTCAATGCTGCCATTGTAACCAAATTGTCGACCCTTTCAGTCTCAAGA
ATATCTTAATATCTGGATTCTGGCCATCCTCCCCAAACAACTTTGGATGC
TTGATAAGCGAAGGTGTATTTTTAACATGGGACCATTTTAGAAAGCATAT
GCCAGGCTCTTCATCTACATCCTTTTTGGAATCATTGAATGATTTGACAT
TACATTTTGGAAGGCAAGGAAGAATAGTGCATTCATCCTTTTCTCAGGCA
TTTAAACAATGGAA
Run BLAST on NCBI

transcript from alignment at sc0001360:1515..2824-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035762 ID=TCONS_00035762|Name=TCONS_00035762|organism=Clytia hemisphaerica|type=transcript|length=1310bp|location=Sequence derived from alignment at sc0001360:1515..2824- (Clytia hemisphaerica)
GCCTGAAGAATCAGCCAAAAAAAAGAAAAGGTCCTGGAAAGAACGAATGG
AAAGAATCGAAAAAGCATGGTCAGAGGAAAAAGAAAACATTTTCAGCTCA
TTAAGATTGAAATCAGCGTTTTTATCAAAAGAGAAATGTGCTTTGTGTTT
ATCTAAAACAGCTGCTGTGGATTGTCACGAGTGTCGTATTCACTTATGTG
AAATTTGTGATCGAGATATTCACAATAAAAACCCACTTCACAACCGCTTT
TCATTTGTAAACGACAAAACTCAAGCTTTGACACCAATGCAGGCCTTAAA
TGATAACCTAGAAATCTATACTGTTGGTGAGTAATATAATATAACCTTGC
ATATTCAAATGATTATGGCCACTTGAATTTGTCCAAATTGTAATAATTTA
AAACATGAAGTTGAACAAAGAAAATTATATGTAATAAATGTAAGTTTATT
CTTGATTTTATTAAATTCTTCTAGATCGACTAGTTCCATTGAGACATGCT
GTGTGCATATGTGGGTCTAATAATTTTGAAGAAATTGTCAAACAAGGAAA
TGTTGTGGTTATAACAATGACAGGTATTATGCTTCAGCTGATTAAAAGCT
ATTTTGATAATTCCTCATGAAGTACTAAACCAGACTAAACAATGNGCTTC
AGCTGATTAAAAGCTATTTTGATAATTCCTCATGAAGTACTAAACCAGAC
AAGTCCATTGACTGATGATCTTTCTCGCCGTCCAATTTTGTAGGTAAATT
TGACTTGGTTCCATTCGTTCTTCAATGCTGCCATTGTAACCAAATTGTCG
ACCCTTTCAGTCTCAAGAATATCTTAATATCTGGATTCTGGCCATCCTCC
CCAAACAACTTTGGATGCTTGATAAGCGAAGGTGTATTTTTAACATGGGA
CCATTTTAGAAAGCATATGCCAGGCTCTTCATCTACATCCTTTTTGGAAT
CATTGAATGATTTGACATTACATTTTGGAAGGGTAAATATGTTAAACATC
ACTTTCGTGTAGAGTAGTACTAGGGAACTTCTGTTATATTGCTAATTGTA
CAATCAAAAGGAATTTTTTTTTGCTTTGAAATCGACAATGAAAGAAATTT
CAATTTAAAATTAATTCCAAAAATTAAAACTAAGTTCTAACAATGGAGGA
TTGTTTTTTTAACAAAATATAATTTGATTTTCTCGTTTATATAGTGATCT
GTGCAAATTTTACATGGTTACTATTATTTCAAACCTTTTTATTTCTTCTA
TCATCTGTAGCAAGGAAGAATAGTGCATTCATCCTTTTCTCAGGCATTTA
AACAATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020977XLOC_020977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035762-exon-sc0001360-1575043694:2499..2824TCONS_00035762-exon-sc0001360-1575043694:2499..2824Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1575043694:2252..2350TCONS_00035762-exon-sc0001360-1575043694:2252..2350Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1575043694:1843..2081TCONS_00035762-exon-sc0001360-1575043694:1843..2081Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1575043694:1515..1564TCONS_00035762-exon-sc0001360-1575043694:1515..1564Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1510915933:2499..2824TCONS_00035762-exon-sc0001360-1510915933:2499..2824Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1510915933:2252..2350TCONS_00035762-exon-sc0001360-1510915933:2252..2350Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1510915933:1843..2081TCONS_00035762-exon-sc0001360-1510915933:1843..2081Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1510915933:1515..1564TCONS_00035762-exon-sc0001360-1510915933:1515..1564Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1491911889:2499..2824TCONS_00035762-exon-sc0001360-1491911889:2499..2824Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1491911889:2252..2350TCONS_00035762-exon-sc0001360-1491911889:2252..2350Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1491911889:1843..2081TCONS_00035762-exon-sc0001360-1491911889:1843..2081Clytia hemisphaericaexon
TCONS_00035762-exon-sc0001360-1491911889:1515..1564TCONS_00035762-exon-sc0001360-1491911889:1515..1564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001360supercontigsc0001360:1515..2824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0834677	0.286917	0.0945065	0	0.0178209	0.14973	0.0509691	0.370042	0.377477	0.0871233	0	0.0440049	0.222047	0	0	0	0	0	0	0	0.484208	0	0.322203	0	0	0	0	0	0	0.0149437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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