TCONS_00035759 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035759
Unique NameTCONS_00035759
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035759 ID=TCONS_00035759|Name=TCONS_00035759|organism=Clytia hemisphaerica|type=transcript|length=523bp
GTcgattatatttttaaaaatatggaTTTCTCTTTATTCGTCTCCCTGAC
ATTCATTCCATTCATTTCAACACAACAAATGCAATGGCgtaaatttaaag
aaatcaaaatttccaacgGAACAGCAAACAGCAGTCAAATTACAGTCcaa
tatgaaatttttgttcgaaaaagtCCCCATCTAAATTATCTCATGACTCA
ATGTTACAAAAAACGTGATCAAGAATACGACCGTCTCTTATGTGCCGAGA
TGTGTATGGTGGCCCATAATTGCTTGACTTGGATGTATAGTGGAAGCACA
CAAACATGTTATAGATGTGATCGTATTTACGGGGCAATAAAAGATATGTT
TGAAGACCAATTTACAACTGATCGGACGTTTGAGCTCTATGAGAAAGTGA
ATCCGTGCAATACACATCTTCTATGCGAGCACGGAAGTCAATGCGTGCCA
GACTTCACGACTGAAACATACACGTGTGAAAGATGTTTCGCACCTTACAC
TGGAAAACATTGCAATGAAACAG
Run BLAST on NCBI

protein sequence of TCONS_00035759-protein

>TCONS_00035759-protein ID=TCONS_00035759-protein|Name=TCONS_00035759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
VDYIFKNMDFSLFVSLTFIPFISTQQMQWRKFKEIKISNGTANSSQITVQ
YEIFVRKSPHLNYLMTQCYKKRDQEYDRLLCAEMCMVAHNCLTWMYSGST
QTCYRCDRIYGAIKDMFEDQFTTDRTFELYEKVNPCNTHLLCEHGSQCVP
DFTTETYTCERCFAPYTGKHCNET
Run BLAST on NCBI

transcript from alignment at sc0001360:26156..26934+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035759 ID=TCONS_00035759|Name=TCONS_00035759|organism=Clytia hemisphaerica|type=transcript|length=779bp|location=Sequence derived from alignment at sc0001360:26156..26934+ (Clytia hemisphaerica)
GTcgattatatttttaaaaatatggaTTTCTCTTTATTCGTCTCCCTGAC
ATTCATTCCATTCATTTCAACACAACAAATGCAATGGCgtaaatttaaag
aaatcaaaatttccaacgGAACAGCAAACAGCAGTCAAATTACAGTCcaa
tatgaaatttttgttcgaaaaagtCCCCATCTAAATTATCTCATGACTCA
ATGTTACAAAAAACGTGATCAAGAATACGACCGTCTCTTATGTGCCGAGA
TGTGTATGGTGGCCCATAATTGCTTGACTTGGATGTATAGTGGAAGCACA
CAAACATGTTATAGATGTGATCGTATTTACGGGGCAATAAAAGATATGTT
TGAAGACCAATTTACAACTGATCGGACGTTTGAGCTCTATGAGAAAGTGG
TAAGAAAATTTGTtcacacgtttttttacaagaccaaactatatataaga
acaaaatgccTCAATGGCAAAAATATTAGGCTTCTCGAACTATAAAACAA
GAAATTTATAATAGGAAGTCAcacaaaaatacttagaaaatgGCGAAAAT
GGGAATGTTTTTAGACAAAAAaactttagatgttcttataaaaaacgtat
attaTGATAATACTTTATACTGCAAAAagtaaatttgttttttcattctt
cATAGAATCCGTGCAATACACATCTTCTATGCGAGCACGGAAGTCAATGC
GTGCCAGACTTCACGACTGAAACATACACGTGTGAAAGATGTTTCGCACC
TTACACTGGAAAACATTGCAATGAAACAG

Coding sequence (CDS) from alignment at sc0001360:26156..26934+

>TCONS_00035759 ID=TCONS_00035759|Name=TCONS_00035759|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0001360:26156..26934+ (Clytia hemisphaerica)
GTcgattatatttttaaaaatatggaTTTCTCTTTATTCGTCTCCCTGAC
ATTCATTCCATTCATTTCAACACAACAAATGCAATGGCgtaaatttaaag
aaatcaaaatttccaacgGAACAGCAAACAGCAGTCAAATTACAGTCcaa
tatgaaatttttgttcgaaaaagtCCCCATCTAAATTATCTCATGACTCA
ATGTTACAAAAAACGTGATCAAGAATACGACCGTCTCTTATGTGCCGAGA
TGTGTATGGTGGCCCATAATTGCTTGACTTGGATGTATAGTGGAAGCACA
CAAACATGTTATAGATGTGATCGTATTTACGGGGCAATAAAAGATATGTT
TGAAGACCAATTTACAACTGATCGGACGTTTGAGCTCTATGAGAAAGTGA
ATCCGTGCAATACACATCTTCTATGCGAGCACGGAAGTCAATGCGTGCCA
GACTTCACGACTGAAACATACACGTGTGAAAGATGTTTCGCACCTTACAC
TGGAAAACATTGCAATGAAACAGTcgattatatttttaaaaatatggaTT
TCTCTTTATTCGTCTCCCTGACATTCATTCCATTCATTTCAACACAACAA
ATGCAATGGCgtaaatttaaagaaatcaaaatttccaacgGAACAGCAAA
CAGCAGTCAAATTACAGTCcaatatgaaatttttgttcgaaaaagtCCCC
ATCTAAATTATCTCATGACTCAATGTTACAAAAAACGTGATCAAGAATAC
GACCGTCTCTTATGTGCCGAGATGTGTATGGTGGCCCATAATTGCTTGAC
TTGGATGTATAGTGGAAGCACACAAACATGTTATAGATGTGATCGTATTT
ACGGGGCAATAAAAGATATGTTTGAAGACCAATTTACAACTGATCGGACG
TTTGAGCTCTATGAGAAAGTGAATCCGTGCAATACACATCTTCTATGCGA
GCACGGAAGTCAATGCGTGCCAGACTTCACGACTGAAACATACACGTGTG
AAAGATGTTTCGCACCTTACACTGGAAAACATTGCAATGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020975XLOC_020975Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035759-proteinTCONS_00035759-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035759-exon-sc0001360-1491911889:26156..26554TCONS_00035759-exon-sc0001360-1491911889:26156..26554Clytia hemisphaericaexon
TCONS_00035759-exon-sc0001360-1510915933:26156..26554TCONS_00035759-exon-sc0001360-1510915933:26156..26554Clytia hemisphaericaexon
TCONS_00035759-exon-sc0001360-1575043694:26156..26554TCONS_00035759-exon-sc0001360-1575043694:26156..26554Clytia hemisphaericaexon
TCONS_00035759-exon-sc0001360-1491911889:26811..26934TCONS_00035759-exon-sc0001360-1491911889:26811..26934Clytia hemisphaericaexon
TCONS_00035759-exon-sc0001360-1510915933:26811..26934TCONS_00035759-exon-sc0001360-1510915933:26811..26934Clytia hemisphaericaexon
TCONS_00035759-exon-sc0001360-1575043694:26811..26934TCONS_00035759-exon-sc0001360-1575043694:26811..26934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001360supercontigsc0001360:26156..26934 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.290524	0	0.190423	0.23587	0.686822	0	1.80345	1.17056	0.449102	0	0.424092	0	3.96353	2.13662	0.764692	1.11897	0.906836	0.942224	2.42617	4.54713	0.154927	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top