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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035758 ID=TCONS_00035758|Name=TCONS_00035758|organism=Clytia hemisphaerica|type=transcript|length=1165bp
CCGTGCAATACACATCTTCTATGCGAGCACGGAAGTCAATGCGTGCCAGA
CTTCACGACTGAAACATACACGTGTGAAAGATGTTTCGCACCTTACACTG
GAAAACATTGCAATGAAACAGGTCCACCCTCCCCTTCTGATTTGTCGCAC
GAAGTCAAAGCTGGTCACAATTCGACATGTAGACATATAAAGTTACATTA
CAACATCCCTGATTATGAAGGATTGAGACCGTTCGTTTTGCGTCCGTGGA
ATGaccagagaacaattaaaatgtTCTGTTCAGGTTACGAGACCATTATT
ACTTCACTAAACGCAACATCAATCCTATCTGTCCGAGATTTGACATCTAC
AGATTTCGCGGACGGACTCGATCTAACAACCGGCAACACAAATTTTAGGG
CAAATTCTTTATTCTTTGATGCGATACTAAAGCAAATAGACGTTGATAAC
ATCTATTTCAGGTGCGTTCAAAATATAATAGGTCATACACATCTAAAAAG
TTCTGAGAGACAAGGACAACCTCTCGAATACTTTGCAAACCGGATAAGCT
ACAATAAAGGTATAAATATGAAAGATACCAACCCTCTTGATACAATACCA
TCAAATACGGCTGTAAACAATACATGGAGTTCGCCTAATATTACCACTGG
TTTTAGACGTGCGTTTAAAGACGTGGTTGTATTAAACGATGGGCGTAGAA
TGACATTTGGTAATAAGTATCAAGAATGTTTTGGTCAGTGGggagaatat
tttcagttttctttTACTTGATTATAAGCAGATATTCGATAGGTTTTCGT
TAGCTATTGACATTTATTAGCCCCCGAGGTGTTGCAATATGCAACGAGGC
GAAGCCGAGTTGGATATAAATTACCGAGTGtcaataaatctcaataacca
acgaaGACCTAtcgaatatatgttttattacaTGCCCAgatgcaaaaaca
aaacaaaagttatgtAAACAGTCGAACAGTTCACATAAAATACTCTCAta
atcgaactttcgaatgttttttttctattttaacgatttttttAATTACT
TATAGTCATACATTTGTTTATGAAATCGTTAATAGCTTTAATCTCGGAAC
GAGATGTTACCAATGGTGTTAGACGTACGTTTAAAGACGTGGTTGTATTA
AACGATGGACGTAGA Run BLAST on NCBI transcript from alignment at sc0001360:12195..14819+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035758 ID=TCONS_00035758|Name=TCONS_00035758|organism=Clytia hemisphaerica|type=transcript|length=2625bp|location=Sequence derived from alignment at sc0001360:12195..14819+ (Clytia hemisphaerica)
CCGTGCAATACACATCTTCTATGCGAGCACGGAAGTCAATGCGTGCCAGA
CTTCACGACTGAAACATACACGTGTGAAAGATGTTTCGCACCTTACACTG
GAAAACATTGCAATGAAACAGGTAAGAATTAGACTCAAAAAAGTGAGGAG
GGAGATCGCTTGGAACGCGCGGCAaccatgacgacggattgtatcttgCT
GTTCCTTTATTTTTGTGgactgtattttttgaaatctattgGAAGTCAAT
GGTCGACATCACCTTAAATCACCATTTACACCGACACCAAATCCtcattt
tataaaattattgaaTTATTGATATTGAATCACTTTCGTAAGACTTTTTC
AAGTGATTTTGAAACTATTTAGAAAACTACTATATATTATTTCATTATTA
CTGTTTCAGGTCCACCCTCCCCTTCTGATTTGTCGCACGGTAAGATTAAC
AACTACCTcgtgggcatttttttgttcgttttatcaccctaaaaccgtcc
cagtcgcaactatagacaatagaaaaagtttctagaaaaatttaaaaagg
attggatcgactTTAGGGGGTAATAAAgtaataataaagtggcacgcgct
tGGCCGCGTGACTACGGTCAAAAAGACTTTTTACTTCTACTGAAGTGCTC
GGCTATTGCAGTTTTATAGCAAcataaaaacacccctgtctcgctaATAT
CAGTTGAAAGAATTCACACTCTCCGCCAATTCATGCAATCGGCTATTCCC
CTCCCCGAAATTAAAAACATCCATAAAAAACTAGCTATTAGAAATTTAGT
AGGAGATTTATTTTGGAACAATGCATACTgtggagggggggggggactta
ccAAAACTGGTTACCAGGTTCACGCATGCGTGTTATCTGTATGAGTTTAA
GTCTGTGTTCTCGAAATCATAAAAATCGAAaactttctataaaaataaat
atcttcaaaaaaatatcttCTGAAAAACCTAGACCTGGGGCTTAGCAAAG
GTCCCCAAAAAGATGAGGGTCGCACCCGTCTCACCTTTTAAAATCCCTTT
CTACGAATCAAACatttctgaattttattattcatAACAGAAGTCAAAGC
TGGTCACAATTCGACATGTAGACATATAAAGTTACATTACAACATCCCTG
ATTATGAAGGATTGAGACCGTTCGTTTTGCGTCCGTGGAATGaccagaga
acaattaaaatgtTCTGTTCAGGTAAGTCTGACTCATCCATTATCACATA
ACAGAGATTATTAGCGAGTTACTGTATGTATGTGTCTAAGGGGAGAAAtc
ttcgcggaatttaatttcgtggttaAGAGGATTTTTAAAATATGGCCTAT
TTCTCCCTAAAAGGACCAATTttataattgatttttaaaatcattagaat
attcgtgtttcgcggaatttaatttcgtggattCTGTCGAAAAACCAgta
aattaaattctgcgaaaattttttctgcggaaattttttcccgcgaaaat
ttattccCTTATTTTTCTATGACTTGTCGTCTTGACTTGTTTCTGACTTG
TTTAGATCCTGAtcgactgaggacgacggtaaacaagcacttttaccgtc
cttgatTTGGTGGGTCAAAAATGCAGGTTATTACAAGTCAGCTTCGGCCA
CTCCACATAAACTCTCGACTACATGATagctaattgataaattagtTTGC
CATCTAACttctaataaagaataaaaTTTGATCTAATTTTCAGGTTACGA
GACCATTATTACTTCACTAAACGCAACATCAATCCTATCTGTCCGAGATT
TGACATCTACAGATTTCGCGGACGGACTCGATCTAACAACCGGCAACACA
AATTTTAGGGCAAATTCTTTATTCTTTGATGCGATACTAAAGCAAATAGA
CGTTGATAACATCTATTTCAGGTGCGTTCAAAATATAATAGGTCATACAC
ATCTAAAAAGTTCTGAGAGACAAGGACAACCTCTCGAATACTTTGCAAAC
CGGATAAGCTACAATAAAGGTATAAATATGAAAGATACCAACCCTCTTGA
TACAATACCATCAAATACGGCTGTAAACAATACATGGAGTTCGCCTAATA
TTACCACTGGTTTTAGACGTGCGTTTAAAGACGTGGTTGTATTAAACGAT
GGGCGTAGAATGACATTTGGTAATAAGTATCAAGAATGTTTTGGTCAGTG
GggagaatattttcagttttctttTACTTGATTATAAGCAGATATTCGAT
AGGTTTTCGTTAGCTATTGACATTTATTAGCCCCCGAGGTGTTGCAATAT
GCAACGAGGCGAAGCCGAGTTGGATATAAATTACCGAGTGtcaataaatc
tcaataaccaacgaaGACCTAtcgaatatatgttttattacaTGCCCAga
tgcaaaaacaaaacaaaagttatgtAAACAGTCGAACAGTTCACATAAAA
TACTCTCAtaatcgaactttcgaatgttttttttctattttaacgatttt
tttAATTACTTATAGTCATACATTTGTTTATGAAATCGTTAATAGCTTTA
ATCTCGGAACGAGATGTTACCAATGGTGTTAGACGTACGTTTAAAGACGT
GGTTGTATTAAACGATGGACGTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035758-exon-sc0001360-1491911889:12195..12315 | TCONS_00035758-exon-sc0001360-1491911889:12195..12315 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1510915933:12195..12315 | TCONS_00035758-exon-sc0001360-1510915933:12195..12315 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1575043694:12195..12315 | TCONS_00035758-exon-sc0001360-1575043694:12195..12315 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1491911889:12604..12633 | TCONS_00035758-exon-sc0001360-1491911889:12604..12633 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1510915933:12604..12633 | TCONS_00035758-exon-sc0001360-1510915933:12604..12633 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1575043694:12604..12633 | TCONS_00035758-exon-sc0001360-1575043694:12604..12633 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1491911889:13285..13416 | TCONS_00035758-exon-sc0001360-1491911889:13285..13416 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1510915933:13285..13416 | TCONS_00035758-exon-sc0001360-1510915933:13285..13416 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1575043694:13285..13416 | TCONS_00035758-exon-sc0001360-1575043694:13285..13416 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1491911889:13938..14819 | TCONS_00035758-exon-sc0001360-1491911889:13938..14819 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1510915933:13938..14819 | TCONS_00035758-exon-sc0001360-1510915933:13938..14819 | Clytia hemisphaerica | exon |
| TCONS_00035758-exon-sc0001360-1575043694:13938..14819 | TCONS_00035758-exon-sc0001360-1575043694:13938..14819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001360 | supercontig | sc0001360:12195..14819 + |
Blast
The following BLAST results are available for this feature:
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