|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035752 ID=TCONS_00035752|Name=TCONS_00035752|organism=Clytia hemisphaerica|type=transcript|length=924bp
CTTGCCATGTCTCTCCTTTACTGACAAGAGAAACTATTTTGGAAGGAATG
ACATAAATTCCCTTGTAGGCAATGTAAGAATCTTcagaaaactttgtttt
taattCACTATTCAAGTGATCGAGGACTGGGATGgtgattgttttttttg
aaataatcagAAGGGGATGAATGGAGAGGATTTGAacgttttgtttgttt
tctacAAACACGGGGAGCCTTCTCAATAATTTCTAATTTCTCAGCCAACA
AAAGAACCTTGGAATAACATTCATCAtgaaattcatcaattttaGGAGAC
CTCCTGTAAGCTTCCACTTTTTTTAGTAGAGACCGAATCTGGTTGACCCC
ATCTGCAATGTCATTACCTTTGGATTGCAAGAGTTCAGTCACCTCTAGTG
ACATATCAAAAACGCAACGAGTTATGACAAGGTTTGCTAAAAACTGGAAA
TCGATGGCTTTGTAAAGACAGTCAGCTTTGGTGACAGTATCACGGTTAAA
AGGTTTCATTGCATTTAATCTCATTTTGTCGAGTGCTTTGAGCATTGCGG
GAAGAAGCTCCTCAAATGAGTCCAAACCCAGAATACGTTCAAGCCACCTA
GTTCTGCAAACATCTTTAAGACGTGTGTGTGTATTCCCTGTAAACATTGA
GTCAATAAACTCTACCAAAACATTTTGACGACCTTCGctcaagttaaaaa
aatatgagCATTCTTTGACTGTCTTTAGTATATTGTTTACATTTCTGATT
TCACATGCTCTACAGATAGAGAGATTCAGACGATGGCAGAAACAGTGACA
ATAAAGAGCCTTCttgtttttgttcaaaattcGCGCAGAGCACCCGCTTT
TGTAGCCCGCAACAGCACCTGCCCCATCATATCCCTGCCCTCTGATATCT
TTATAATCCAGACCTAGCTTTTCA Run BLAST on NCBI protein sequence of TCONS_00035752-protein >TCONS_00035752-protein ID=TCONS_00035752-protein|Name=TCONS_00035752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
EKLGLDYKDIRGQGYDGAGAVAGYKSGCSARILNKNKKALYCHCFCHRLN
LSICRACEIRNVNNILKTVKECSYFFNLSEGRQNVLVEFIDSMFTGNTHT
RLKDVCRTRWLERILGLDSFEELLPAMLKALDKMRLNAMKPFNRDTVTKA
DCLYKAIDFQFLANLVITRCVFDMSLEVTELLQSKGNDIADGVNQIRSLL
KKVEAYRRSPKIDEFHDECYSKVLLLAEKLEIIEKAPRVCRKQTKRSNPL
HSSPSDYFKKNNHHPSPRSLE Run BLAST on NCBI transcript from alignment at sc0001357:22618..23541 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035752 ID=TCONS_00035752|Name=TCONS_00035752|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0001357:22618..23541 (Clytia hemisphaerica)
TGAAAAGCTAGGTCTGGATTATAAAGATATCAGAGGGCAGGGATATGATG
GGGCAGGTGCTGTTGCGGGCTACAAAAGCGGGTGCTCTGCGCgaattttg
aacaaaaacaaGAAGGCTCTTTATTGTCACTGTTTCTGCCATCGTCTGAA
TCTCTCTATCTGTAGAGCATGTGAAATCAGAAATGTAAACAATATACTAA
AGACAGTCAAAGAATGctcatatttttttaacttgagCGAAGGTCGTCAA
AATGTTTTGGTAGAGTTTATTGACTCAATGTTTACAGGGAATACACACAC
ACGTCTTAAAGATGTTTGCAGAACTAGGTGGCTTGAACGTATTCTGGGTT
TGGACTCATTTGAGGAGCTTCTTCCCGCAATGCTCAAAGCACTCGACAAA
ATGAGATTAAATGCAATGAAACCTTTTAACCGTGATACTGTCACCAAAGC
TGACTGTCTTTACAAAGCCATCGATTTCCAGTTTTTAGCAAACCTTGTCA
TAACTCGTTGCGTTTTTGATATGTCACTAGAGGTGACTGAACTCTTGCAA
TCCAAAGGTAATGACATTGCAGATGGGGTCAACCAGATTCGGTCTCTACT
AAAAAAAGTGGAAGCTTACAGGAGGTCTCCtaaaattgatgaatttcaTG
ATGAATGTTATTCCAAGGTTCTTTTGTTGGCTGAGAAATTAGAAATTATT
GAGAAGGCTCCCCGTGTTTgtagaaaacaaacaaaacgtTCAAATCCTCT
CCATTCATCCCCTTctgattatttcaaaaaaaacaatcacCATCCCAGTC
CTCGATCACTTGAATAGTGaattaaaaacaaagttttctgAAGATTCTTA
CATTGCCTACAAGGGAATTTATGTCATTCCTTCCAAAATAGTTTCTCTTG
TCAGTAAAGGAGAGACATGGCAAG Coding sequence (CDS) from alignment at sc0001357:22618..23541 >TCONS_00035752 ID=TCONS_00035752|Name=TCONS_00035752|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0001357:22618..23541 (Clytia hemisphaerica)
GAAAAGCTAGGTCTGGATTATAAAGATATCAGAGGGCAGGGATATGATGG
GGCAGGTGCTGTTGCGGGCTACAAAAGCGGGTGCTCTGCGCgaattttga
acaaaaacaaGAAGGCTCTTTATTGTCACTGTTTCTGCCATCGTCTGAAT
CTCTCTATCTGTAGAGCATGTGAAATCAGAAATGTAAACAATATACTAAA
GACAGTCAAAGAATGctcatatttttttaacttgagCGAAGGTCGTCAAA
ATGTTTTGGTAGAGTTTATTGACTCAATGTTTACAGGGAATACACACACA
CGTCTTAAAGATGTTTGCAGAACTAGGTGGCTTGAACGTATTCTGGGTTT
GGACTCATTTGAGGAGCTTCTTCCCGCAATGCTCAAAGCACTCGACAAAA
TGAGATTAAATGCAATGAAACCTTTTAACCGTGATACTGTCACCAAAGCT
GACTGTCTTTACAAAGCCATCGATTTCCAGTTTTTAGCAAACCTTGTCAT
AACTCGTTGCGTTTTTGATATGTCACTAGAGGTGACTGAACTCTTGCAAT
CCAAAGGTAATGACATTGCAGATGGGGTCAACCAGATTCGGTCTCTACTA
AAAAAAGTGGAAGCTTACAGGAGGTCTCCtaaaattgatgaatttcaTGA
TGAATGTTATTCCAAGGTTCTTTTGTTGGCTGAGAAATTAGAAATTATTG
AGAAGGCTCCCCGTGTTTgtagaaaacaaacaaaacgtTCAAATCCTCTC
CATTCATCCCCTTctgattatttcaaaaaaaacaatcacCATCCCAGTCC
TCGATCACTTGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035752-exon-sc0001357-1491911889:22618..23541 | TCONS_00035752-exon-sc0001357-1491911889:22618..23541 | Clytia hemisphaerica | exon |
| TCONS_00035752-exon-sc0001357-1510915933:22618..23541 | TCONS_00035752-exon-sc0001357-1510915933:22618..23541 | Clytia hemisphaerica | exon |
| TCONS_00035752-exon-sc0001357-1575043694:22618..23541 | TCONS_00035752-exon-sc0001357-1575043694:22618..23541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001357 | supercontig | sc0001357:22618..23541 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
