TCONS_00035751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035751
Unique NameTCONS_00035751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035751 ID=TCONS_00035751|Name=TCONS_00035751|organism=Clytia hemisphaerica|type=transcript|length=386bp
GTTAAATCTTGGGGCTGTGGTGGCCAAGGTATCGTGTCagttaaattttt
gatttcctttcGAATAAAATCAAAGGTTTTGATAGCTTGTACCTCTTCAT
TTTTACATTCATTCTTCAGTTGATCATTTTCCTCTCTAGCGTTGACATAT
TTCAAGACAATTTCATCGAGGGAAACAGATTGGTGATAAACATACGTTTC
ATTTCTTGTTTTCAGAAATTTGAGAGATGGCATCTTCGTTTCTAGACTTC
TTTTAAAGTTCTTTTTTGTGGAAGCTTCCATGGTGAGATCATTGTCCTTC
AGTTTTCCTTCCATAATGGACATGAGAAAGTTCAACGTGACAATTTCACT
TGAATGGAAACTTTCTTGTTCTAAGCAATACTTAAT
Run BLAST on NCBI

protein sequence of TCONS_00035751-protein

>TCONS_00035751-protein ID=TCONS_00035751-protein|Name=TCONS_00035751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
IKYCLEQESFHSSEIVTLNFLMSIMEGKLKDNDLTMEASTKKNFKRSLET
KMPSLKFLKTRNETYVYHQSVSLDEIVLKYVNAREENDQLKNECKNEEVQ
AIKTFDFIRKEIKNLTDTIPWPPQPQDL
Run BLAST on NCBI

transcript from alignment at sc0001357:12442..12827

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035751 ID=TCONS_00035751|Name=TCONS_00035751|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at sc0001357:12442..12827 (Clytia hemisphaerica)
ATTAAGTATTGCTTAGAACAAGAAAGTTTCCATTCAAGTGAAATTGTCAC
GTTGAACTTTCTCATGTCCATTATGGAAGGAAAACTGAAGGACAATGATC
TCACCATGGAAGCTTCCACAAAAAAGAACTTTAAAAGAAGTCTAGAAACG
AAGATGCCATCTCTCAAATTTCTGAAAACAAGAAATGAAACGTATGTTTA
TCACCAATCTGTTTCCCTCGATGAAATTGTCTTGAAATATGTCAACGCTA
GAGAGGAAAATGATCAACTGAAGAATGAATGTAAAAATGAAGAGGTACAA
GCTATCAAAACCTTTGATTTTATTCgaaaggaaatcaaaaatttaactGA
CACGATACCTTGGCCACCACAGCCCCAAGATTTAAC

Coding sequence (CDS) from alignment at sc0001357:12442..12827

>TCONS_00035751 ID=TCONS_00035751|Name=TCONS_00035751|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0001357:12442..12827 (Clytia hemisphaerica)
ATTAAGTATTGCTTAGAACAAGAAAGTTTCCATTCAAGTGAAATTGTCAC
GTTGAACTTTCTCATGTCCATTATGGAAGGAAAACTGAAGGACAATGATC
TCACCATGGAAGCTTCCACAAAAAAGAACTTTAAAAGAAGTCTAGAAACG
AAGATGCCATCTCTCAAATTTCTGAAAACAAGAAATGAAACGTATGTTTA
TCACCAATCTGTTTCCCTCGATGAAATTGTCTTGAAATATGTCAACGCTA
GAGAGGAAAATGATCAACTGAAGAATGAATGTAAAAATGAAGAGGTACAA
GCTATCAAAACCTTTGATTTTATTCgaaaggaaatcaaaaatttaactGA
CACGATACCTTGGCCACCACAGCCCCAAGATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020968XLOC_020968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035751-exon-sc0001357-1491911889:12442..12827TCONS_00035751-exon-sc0001357-1491911889:12442..12827Clytia hemisphaericaexon
TCONS_00035751-exon-sc0001357-1510915933:12442..12827TCONS_00035751-exon-sc0001357-1510915933:12442..12827Clytia hemisphaericaexon
TCONS_00035751-exon-sc0001357-1575043694:12442..12827TCONS_00035751-exon-sc0001357-1575043694:12442..12827Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035751-proteinTCONS_00035751-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001357supercontigsc0001357:12442..12827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200439	0	0	0.318275	1.12406	1.70878	0	0	0	1.46452	0	0.266983	0	0.311161	0.455264	0.366426	0.177793	0.154226	0	0.825881	0.193796	1.13432	0.22982	0.826732	0	0.430028	0.274842	1.17328	0.222472	0.0758273
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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