TCONS_00035750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035750
Unique NameTCONS_00035750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035750 ID=TCONS_00035750|Name=TCONS_00035750|organism=Clytia hemisphaerica|type=transcript|length=785bp
NNGATTTACTatagaaatgctgaaaatcataaaattttatgtttccaaTG
AGCAAATACAGCATATTGTGAAAATCGGATGAAACGATAATATGATACAA
TAACTTTAAGCGCATATTTTGCAGTATCGATGTTGGCGATTGTATCGAAT
GTTGgtgactttaatgaaaattttcgaaaccaTTCGAATATTTGTTAATA
AAGACTGAAAATGACGGCGATTTAGGATATTTTGAGATTCAATGAATTTG
AGCTGCATTAGGATAAGCGATTACATCAATTGTAATAATtccaaaataga
aatatatatCCACTTATACCACTATTCGACGTTTCAATAATTATCCTTAT
AATATCAACCAAAATGCATACATATATAGATGAATCAATTCACTTGCAAT
GCACttccatattttttcattccataTTTTTCCATATTGTCTATTTTTTA
ACTCTGTGacagtctttttgatttttgagtagacaaatgaataacaaaaa
gaatacaagaaaataataaaacaattaacaaaagccttttaaaaaatggt
agaaatatgtgacttcccaagcgatttaaagtacctgaaaatcagaCCGG
TATTACGAGCGGTCTAGTAgcggtcaaatttttgttttagatcgGCCTCC
AGACTTTCTAGAAATGTGATCTCTTCTAGACGCTCGTGGCCGCTCGTTGG
ACCGGTCCAGGCCGCTAGTTAGTGATTTTTAGTAACAATCACATCAAAAA
ACTGTTGTAAAAGGATGTCAACCGAGCTATCGGGA
Run BLAST on NCBI

transcript from alignment at sc0001355:62105..62889

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035750 ID=TCONS_00035750|Name=TCONS_00035750|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0001355:62105..62889 (Clytia hemisphaerica)
TCCCGATAGCTCGGTTGACATCCTTTTACAACAGTTTTTTGATGTGATTG
TTACTAAAAATCACTAACTAGCGGCCTGGACCGGTCCAACGAGCGGCCAC
GAGCGTCTAGAAGAGATCACATTTCTAGAAAGTCTGGAGGCcgatctaaa
acaaaaatttgaccgcTACTAGACCGCTCGTAATACCGGtctgattttca
ggtactttaaatcgcttgggaagtcacatatttctaccattttttaaaag
gcttttgttaattgttttattattttcttgtattctttttgttattcatt
tgtctactcaaaaatcaaaaagactgtCACAGAGTTAAAAAATAGACAAT
ATGGAAAAAtatggaatgaaaaaatatggaaGTGCATTGCAAGTGAATTG
ATTCATCTATATATGTATGCATTTTGGTTGATATTATAAGGATAATTATT
GAAACGTCGAATAGTGGTATAAGTGGatatatatttctattttggaATTA
TTACAATTGATGTAATCGCTTATCCTAATGCAGCTCAAATTCATTGAATC
TCAAAATATCCTAAATCGCCGTCATTTTCAGTCTTTATTAACAAATATTC
GAAtggtttcgaaaattttcattaaagtcacCAACATTCGATACAATCGC
CAACATCGATACTGCAAAATATGCGCTTAAAGTTATTGTATCATATTATC
GTTTCATCCGATTTTCACAATATGCTGTATTTGCTCAttggaaacataaa
attttatgattttcagcatttctatAGTAAATCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020967XLOC_020967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035750-exon-sc0001355-1491911889:62105..62889TCONS_00035750-exon-sc0001355-1491911889:62105..62889Clytia hemisphaericaexon
TCONS_00035750-exon-sc0001355-1510915933:62105..62889TCONS_00035750-exon-sc0001355-1510915933:62105..62889Clytia hemisphaericaexon
TCONS_00035750-exon-sc0001355-1575043694:62105..62889TCONS_00035750-exon-sc0001355-1575043694:62105..62889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001355supercontigsc0001355:62105..62889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91881	2.31379	1.27611	0.948195	8.40141	2.62337	2.92949	3.4654	2.94085	3.10336	1.86897	4.20436	2.39012	2.79057	2.87759	4.27243	2.28647	3.67056	6.31196	4.47115	8.95299	10.9558	13.5556	12.7598	1.89744	1.69275	17.8263	13.296	13.2549	14.7526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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